Variant report
| Variant | rs28361745 |
|---|---|
| Chromosome Location | chr18:25857010-25857011 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 18:25752943-25759013..18:25856410-25867490 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170558 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs17494241 | 1.00[AMR][1000 genomes] |
| rs17494297 | 1.00[AMR][1000 genomes] |
| rs17494339 | 1.00[AMR][1000 genomes] |
| rs17494346 | 1.00[AMR][1000 genomes] |
| rs17494565 | 1.00[AMR][1000 genomes] |
| rs17494676 | 1.00[AMR][1000 genomes] |
| rs17494781 | 1.00[AMR][1000 genomes] |
| rs17494843 | 1.00[AMR][1000 genomes] |
| rs17494932 | 1.00[AMR][1000 genomes] |
| rs17495369 | 1.00[AMR][1000 genomes] |
| rs17535908 | 1.00[AMR][1000 genomes] |
| rs17535964 | 1.00[AMR][1000 genomes] |
| rs17536229 | 1.00[AMR][1000 genomes] |
| rs17536243 | 1.00[AMR][1000 genomes] |
| rs17536305 | 1.00[AMR][1000 genomes] |
| rs17536437 | 1.00[AMR][1000 genomes] |
| rs17536827 | 1.00[AMR][1000 genomes] |
| rs17536961 | 1.00[AMR][1000 genomes] |
| rs28361744 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9622 | chr18:25749905-26032816 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25855800-25861400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
