Variant report

Variant	rs17494241
Chromosome Location	chr18:25644874-25644875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17493367	1.00[AMR][1000 genomes]
rs17493786	1.00[AMR][1000 genomes]
rs17493807	1.00[AMR][1000 genomes]
rs17493821	1.00[AMR][1000 genomes]
rs17493996	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494024	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17494038	1.00[AMR][1000 genomes]
rs17494108	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494297	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494339	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494346	1.00[AMR][1000 genomes]
rs17494565	1.00[AMR][1000 genomes]
rs17494676	1.00[AMR][1000 genomes]
rs17494781	1.00[AMR][1000 genomes]
rs17494843	1.00[AMR][1000 genomes]
rs17494932	1.00[AMR][1000 genomes]
rs17495369	1.00[AMR][1000 genomes]
rs17522116	1.00[AMR][1000 genomes]
rs17522292	1.00[AMR][1000 genomes]
rs17522575	1.00[AMR][1000 genomes]
rs17522582	1.00[AMR][1000 genomes]
rs17522784	1.00[AMR][1000 genomes]
rs17535908	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17535964	1.00[AMR][1000 genomes]
rs17536229	1.00[AMR][1000 genomes]
rs17536243	1.00[AMR][1000 genomes]
rs17536305	1.00[AMR][1000 genomes]
rs17536437	1.00[AMR][1000 genomes]
rs17536827	1.00[AMR][1000 genomes]
rs17536961	1.00[AMR][1000 genomes]
rs2586574	1.00[AMR][1000 genomes]
rs28361744	1.00[AMR][1000 genomes]
rs28361745	1.00[AMR][1000 genomes]
rs34886338	1.00[AMR][1000 genomes]
rs674839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
2	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr18:25641200-25645000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr18:25641400-25645000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr18:25642400-25646800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr18:25642400-25646800	Enhancers	HSMM	muscle
7	chr18:25642600-25645000	Enhancers	Ovary	ovary
8	chr18:25642600-25645000	Enhancers	Osteobl	bone
9	chr18:25642600-25646200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:25642600-25646800	Enhancers	Fetal Heart	heart
11	chr18:25642800-25646200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr18:25642800-25647400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr18:25643000-25645000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:25643200-25645800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr18:25643200-25646000	Enhancers	Brain Hippocampus Middle	brain
17	chr18:25643200-25646600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr18:25643200-25646800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr18:25643200-25647400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr18:25643800-25645000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:25643800-25645000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr18:25643800-25646800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr18:25643800-25651200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr18:25643800-25653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr18:25644000-25645000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr18:25644000-25645200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr18:25644000-25645200	Weak transcription	NHLF	lung
28	chr18:25644000-25645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr18:25644200-25645000	Enhancers	Aorta	Aorta
31	chr18:25644200-25646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr18:25644200-25646200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr18:25644200-25646600	Enhancers	Brain Germinal Matrix	brain
34	chr18:25644200-25647400	Weak transcription	Fetal Lung	lung
35	chr18:25644400-25645000	Weak transcription	Right Ventricle	heart
36	chr18:25644400-25645000	Enhancers	NH-A	brain
37	chr18:25644600-25646000	Enhancers	Brain Substantia Nigra	brain
38	chr18:25644600-25646000	Enhancers	HepG2	liver
39	chr18:25644600-25646600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr18:25644600-25646800	Enhancers	HUVEC	blood vessel
41	chr18:25644800-25645000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr18:25644800-25645000	Enhancers	Fetal Brain Female	brain
43	chr18:25644800-25645000	Enhancers	Left Ventricle	heart
44	chr18:25644800-25645200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr18:25644800-25645400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr18:25644800-25645400	Flanking Active TSS	A549	lung
47	chr18:25644800-25645600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr18:25644800-25645600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr18:25644800-25645600	Flanking Active TSS	HSMMtube	muscle
50	chr18:25644800-25645800	Enhancers	Brain Angular Gyrus	brain

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