Variant report

Variant	rs17494339
Chromosome Location	chr18:25653863-25653864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17493367	1.00[AMR][1000 genomes]
rs17493786	1.00[AMR][1000 genomes]
rs17493807	1.00[AMR][1000 genomes]
rs17493821	1.00[AMR][1000 genomes]
rs17493996	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494024	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17494038	1.00[AMR][1000 genomes]
rs17494108	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494241	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494297	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494346	1.00[AMR][1000 genomes]
rs17494565	1.00[AMR][1000 genomes]
rs17494676	1.00[AMR][1000 genomes]
rs17494781	1.00[AMR][1000 genomes]
rs17494843	1.00[AMR][1000 genomes]
rs17494932	1.00[AMR][1000 genomes]
rs17495369	1.00[AMR][1000 genomes]
rs17522116	1.00[AMR][1000 genomes]
rs17522292	1.00[AMR][1000 genomes]
rs17522575	1.00[AMR][1000 genomes]
rs17522582	1.00[AMR][1000 genomes]
rs17522784	1.00[AMR][1000 genomes]
rs17535908	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17535964	1.00[AMR][1000 genomes]
rs17536229	1.00[AMR][1000 genomes]
rs17536243	1.00[AMR][1000 genomes]
rs17536305	1.00[AMR][1000 genomes]
rs17536437	1.00[AMR][1000 genomes]
rs17536827	1.00[AMR][1000 genomes]
rs17536961	1.00[AMR][1000 genomes]
rs2586574	1.00[AMR][1000 genomes]
rs28361744	1.00[AMR][1000 genomes]
rs28361745	1.00[AMR][1000 genomes]
rs34886338	1.00[AMR][1000 genomes]
rs674839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
4	chr18:25646200-25666400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:25646800-25654000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:25647000-25655200	Weak transcription	NH-A	brain
7	chr18:25647600-25655000	Weak transcription	Osteobl	bone
8	chr18:25649600-25661400	Enhancers	Fetal Heart	heart
9	chr18:25650400-25654200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:25650600-25666800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:25651200-25654200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr18:25651200-25661800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr18:25651400-25655200	Weak transcription	Brain Angular Gyrus	brain
14	chr18:25651400-25655200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr18:25651400-25655400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr18:25651600-25655200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:25651600-25665200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr18:25651800-25655800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr18:25652200-25655000	Weak transcription	Brain Anterior Caudate	brain
20	chr18:25652200-25655200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr18:25652400-25654000	Weak transcription	Spleen	Spleen
22	chr18:25652400-25655000	Weak transcription	Brain Hippocampus Middle	brain
23	chr18:25652400-25655200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr18:25652400-25655200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr18:25652400-25655400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:25652400-25657000	Weak transcription	HUVEC	blood vessel
27	chr18:25652400-25659600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr18:25652400-25659600	Weak transcription	Right Atrium	heart
29	chr18:25652600-25659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:25652600-25661800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr18:25652600-25663800	Weak transcription	Right Ventricle	heart
32	chr18:25653000-25654400	Enhancers	Liver	Liver
33	chr18:25653200-25654600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr18:25653200-25657200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr18:25653400-25654400	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr18:25653400-25654400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr18:25653400-25656200	Enhancers	HepG2	liver
38	chr18:25653600-25654000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr18:25653600-25654000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr18:25653600-25654000	Enhancers	Brain Germinal Matrix	brain
41	chr18:25653600-25654000	Enhancers	Fetal Intestine Large	intestine
42	chr18:25653600-25654000	Genic enhancers	HSMM	muscle
43	chr18:25653600-25654200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr18:25653600-25654200	Enhancers	HSMMtube	muscle
45	chr18:25653600-25654600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr18:25653600-25655200	Enhancers	A549	lung
47	chr18:25653600-25655600	Enhancers	Left Ventricle	heart
48	chr18:25653800-25654000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr18:25653800-25654200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr18:25653800-25654400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links