Variant report

Variant	rs17494781
Chromosome Location	chr18:25700002-25700003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17493367	1.00[AMR][1000 genomes]
rs17493786	1.00[AMR][1000 genomes]
rs17493807	1.00[AMR][1000 genomes]
rs17493821	1.00[AMR][1000 genomes]
rs17493996	1.00[AMR][1000 genomes]
rs17494024	1.00[AMR][1000 genomes]
rs17494038	1.00[AMR][1000 genomes]
rs17494108	1.00[AMR][1000 genomes]
rs17494241	1.00[AMR][1000 genomes]
rs17494297	1.00[AMR][1000 genomes]
rs17494339	1.00[AMR][1000 genomes]
rs17494346	1.00[AMR][1000 genomes]
rs17494565	1.00[AMR][1000 genomes]
rs17494676	1.00[AMR][1000 genomes]
rs17494843	0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494932	1.00[AMR][1000 genomes]
rs17495369	1.00[AMR][1000 genomes]
rs17522116	1.00[AMR][1000 genomes]
rs17522292	1.00[AMR][1000 genomes]
rs17522575	1.00[AMR][1000 genomes]
rs17522582	1.00[AMR][1000 genomes]
rs17522784	1.00[AMR][1000 genomes]
rs17535908	1.00[AMR][1000 genomes]
rs17535964	1.00[AMR][1000 genomes]
rs17536229	1.00[AMR][1000 genomes]
rs17536243	1.00[AMR][1000 genomes]
rs17536305	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs17536437	1.00[AMR][1000 genomes]
rs17536827	1.00[AMR][1000 genomes]
rs17536961	1.00[AMR][1000 genomes]
rs2586574	1.00[AMR][1000 genomes]
rs28361744	1.00[AMR][1000 genomes]
rs28361745	1.00[AMR][1000 genomes]
rs34886338	1.00[AMR][1000 genomes]
rs674839	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25691400-25703400	Weak transcription	Fetal Brain Male	brain
2	chr18:25692200-25703200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr18:25692800-25700600	Enhancers	Fetal Heart	heart
4	chr18:25692800-25703600	Weak transcription	Ovary	ovary
5	chr18:25693200-25703600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:25695400-25708400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr18:25695600-25701600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:25695600-25703600	Weak transcription	Aorta	Aorta
9	chr18:25695600-25706800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr18:25696000-25701200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr18:25696000-25701200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr18:25696200-25701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:25696200-25727800	Weak transcription	HSMMtube	muscle
14	chr18:25696400-25701600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr18:25696600-25715800	Weak transcription	HUVEC	blood vessel
16	chr18:25696800-25703400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr18:25696800-25703600	Weak transcription	HSMM	muscle
18	chr18:25697000-25705600	Weak transcription	NHLF	lung
19	chr18:25697000-25708200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr18:25697400-25703600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr18:25697600-25701600	Weak transcription	NH-A	brain
22	chr18:25697600-25703200	Weak transcription	Liver	Liver
23	chr18:25697800-25715600	Weak transcription	Dnd41	blood
24	chr18:25698200-25708000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:25699000-25700400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
26	chr18:25699000-25701800	Enhancers	Osteobl	bone
27	chr18:25699200-25701200	Enhancers	Brain Angular Gyrus	brain
28	chr18:25699200-25701200	Weak transcription	Brain Germinal Matrix	brain
29	chr18:25699200-25701800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr18:25699600-25700200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr18:25699600-25700200	Enhancers	Brain Substantia Nigra	brain
32	chr18:25700000-25700200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr18:25700000-25700600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:25700000-25700800	Weak transcription	Right Ventricle	heart
35	chr18:25700000-25701600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:25700000-25701600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr18:25700000-25701600	Weak transcription	Left Ventricle	heart
38	chr18:25700000-25701600	Weak transcription	Right Atrium	heart
39	chr18:25700000-25702000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr18:25700000-25702400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr18:25700000-25702800	Weak transcription	Brain Anterior Caudate	brain
42	chr18:25700000-25703200	Weak transcription	Brain Hippocampus Middle	brain
43	chr18:25700000-25703400	Weak transcription	Brain Inferior Temporal Lobe	brain

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