Variant report

Variant	rs28370991
Chromosome Location	chr4:77122107-77122108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77118780..77124053-chr4:77134347..77137767,5	MCF-7	breast:
2	chr4:77118894..77122374-chr4:77129647..77132337,3	K562	blood:
3	chr4:77120877..77123601-chr4:77133534..77136298,3	MCF-7	breast:
4	chr4:77114541..77118897-chr4:77119397..77123368,6	K562	blood:
5	chr4:77119760..77123050-chr4:77133589..77135332,3	K562	blood:

Variant related genes	Relation type
ENSG00000138760	Chromatin interaction
ENSG00000189157	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11937264	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11938195	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1348209	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372410	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1372411	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1542092	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1542093	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1542094	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1542095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17001534	0.81[ASN][1000 genomes]
rs17001542	0.81[ASN][1000 genomes]
rs17001551	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17001559	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17001593	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17001598	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17001601	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17001606	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17001633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2165587	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35442986	0.81[ASN][1000 genomes]
rs3733255	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3733256	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4416503	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4639101	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73826361	0.81[ASN][1000 genomes]
rs7436214	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7436661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799666	chr4:77119942-77129568	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77114200-77122400	Enhancers	Right Ventricle	heart
4	chr4:77114800-77122800	Enhancers	Psoas Muscle	Psoas
5	chr4:77115200-77122200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:77115400-77122600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:77116200-77122400	Enhancers	Pancreas	Pancrea
8	chr4:77116200-77122400	Enhancers	Right Atrium	heart
9	chr4:77116600-77122600	Enhancers	Fetal Thymus	thymus
10	chr4:77116800-77122200	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:77117000-77122800	Enhancers	Small Intestine	intestine
12	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:77117200-77129200	Enhancers	Liver	Liver
14	chr4:77117400-77122600	Enhancers	Thymus	Thymus
15	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:77117800-77122200	Enhancers	NHDF-Ad	bronchial
17	chr4:77117800-77122400	Enhancers	Left Ventricle	heart
18	chr4:77117800-77122800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:77118000-77122400	Enhancers	Fetal Heart	heart
20	chr4:77118200-77122600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr4:77118600-77122400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:77118800-77122200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:77118800-77122400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr4:77118800-77122400	Enhancers	Fetal Stomach	stomach
25	chr4:77118800-77122600	Enhancers	Fetal Muscle Leg	muscle
26	chr4:77118800-77123000	Enhancers	Stomach Mucosa	stomach
27	chr4:77118800-77124200	Enhancers	Fetal Intestine Large	intestine
28	chr4:77118800-77125400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:77119200-77122400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:77119400-77122200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:77119400-77122600	Enhancers	Gastric	stomach
32	chr4:77119400-77123200	Enhancers	HepG2	liver
33	chr4:77119800-77122400	Enhancers	Lung	lung
34	chr4:77119800-77122800	Enhancers	Placenta	Placenta
35	chr4:77119800-77123000	Enhancers	Brain Germinal Matrix	brain
36	chr4:77119800-77127600	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr4:77120000-77122200	Enhancers	HUVEC	blood vessel
38	chr4:77120000-77122600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr4:77120000-77122600	Enhancers	HSMM	muscle
40	chr4:77120000-77122800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:77120000-77130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:77120200-77122400	Enhancers	Fetal Kidney	kidney
43	chr4:77120200-77122600	Enhancers	Fetal Brain Male	brain
44	chr4:77120200-77123000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:77120200-77123000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr4:77120200-77129400	Enhancers	Brain Substantia Nigra	brain
47	chr4:77120200-77129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:77120400-77122200	Enhancers	Fetal Lung	lung
49	chr4:77120400-77122200	Weak transcription	K562	blood
50	chr4:77120400-77122400	Enhancers	Colonic Mucosa	Colon

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