Variant report

Variant	rs3733255
Chromosome Location	chr4:77082749-77082750
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77067723..77069563-chr4:77082506..77084530,2	K562	blood:

Variant related genes	Relation type
ENSG00000138750	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11097229	0.81[ASN][1000 genomes]
rs11937264	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11938195	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1348209	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1372410	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1372411	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1465923	0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1542092	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1542095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17001389	0.83[ASN][1000 genomes]
rs17001391	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17001392	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs17001393	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17001395	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs17001396	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs17001398	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.83[ASN][1000 genomes]
rs17001534	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17001542	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17001551	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17001593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17001598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17001601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17001606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17001633	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2165587	0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28370991	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35442986	0.89[ASN][1000 genomes]
rs3733256	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282210	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4379080	0.83[ASN][1000 genomes]
rs4416503	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4639101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6826514	0.81[ASN][1000 genomes]
rs6856609	0.86[JPT][hapmap]
rs73825885	0.81[ASN][1000 genomes]
rs73826361	0.89[ASN][1000 genomes]
rs7436214	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7436661	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7682766	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470047	chr4:77033590-77096777	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv594693	chr4:77033590-77101068	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv461558	chr4:77033725-77115553	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv594694	chr4:77033725-77115553	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1008318	chr4:77042356-77095658	Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv537144	chr4:77042356-77095658	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv1000539	chr4:77042356-77105492	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1000178	chr4:77053046-77113080	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77070200-77082800	Weak transcription	Lung	lung
2	chr4:77070400-77093400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77070600-77083800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:77070600-77113600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:77070800-77083000	Weak transcription	Colonic Mucosa	Colon
6	chr4:77070800-77083800	Weak transcription	Fetal Kidney	kidney
7	chr4:77070800-77088400	Weak transcription	Stomach Mucosa	stomach
8	chr4:77070800-77093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:77071000-77086800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:77071000-77087200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:77071200-77084200	Weak transcription	Fetal Thymus	thymus
12	chr4:77071200-77087800	Weak transcription	HepG2	liver
13	chr4:77071200-77113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:77071600-77088600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:77077400-77089000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:77077800-77084200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:77077800-77089800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:77078000-77089200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:77078200-77100600	Weak transcription	K562	blood
20	chr4:77078400-77084000	Weak transcription	Fetal Heart	heart
21	chr4:77078400-77087000	Weak transcription	NHEK	skin
22	chr4:77078600-77100800	Strong transcription	Placenta	Placenta
23	chr4:77079200-77089400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:77079200-77098000	Strong transcription	Fetal Muscle Leg	muscle
25	chr4:77079200-77100800	Strong transcription	Liver	Liver
26	chr4:77079400-77087000	Strong transcription	Brain Hippocampus Middle	brain
27	chr4:77079400-77087400	Strong transcription	Brain Inferior Temporal Lobe	brain
28	chr4:77079400-77097200	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr4:77079400-77098800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:77079400-77100000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:77079400-77100800	Strong transcription	Fetal Intestine Large	intestine
32	chr4:77079400-77101400	Strong transcription	Fetal Muscle Trunk	muscle
33	chr4:77079400-77108200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr4:77079600-77085400	Strong transcription	HSMM	muscle
35	chr4:77079600-77088200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:77079600-77091000	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:77079600-77098800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:77079600-77099000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr4:77079600-77101200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr4:77079600-77101400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:77079800-77098000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:77079800-77101000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr4:77080000-77091600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr4:77080200-77085400	Strong transcription	Brain Anterior Caudate	brain
45	chr4:77080400-77091400	Strong transcription	Osteobl	bone
46	chr4:77080400-77098400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:77080600-77113600	Weak transcription	Thymus	Thymus
48	chr4:77080800-77085400	Strong transcription	Fetal Lung	lung
49	chr4:77080800-77099000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr4:77080800-77101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links