Variant report

Variant	rs6826514
Chromosome Location	chr4:77010700-77010701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76910404..76912093-chr4:77009234..77010931,2	MCF-7	breast:
2	chr4:77006287..77011420-chr4:77011515..77015802,5	K562	blood:
3	chr4:76987150..76989356-chr4:77009546..77012461,2	K562	blood:

Variant related genes	Relation type
ENSG00000198301	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11097229	0.95[ASN][1000 genomes]
rs11942837	0.98[EUR][1000 genomes]
rs17001389	0.92[ASN][1000 genomes]
rs17001391	0.92[ASN][1000 genomes]
rs17001392	0.92[ASN][1000 genomes]
rs17001393	0.92[ASN][1000 genomes]
rs17001395	0.92[ASN][1000 genomes]
rs17001396	0.92[ASN][1000 genomes]
rs17001398	0.92[ASN][1000 genomes]
rs17001534	0.92[ASN][1000 genomes]
rs17001542	0.92[ASN][1000 genomes]
rs17001551	0.81[ASN][1000 genomes]
rs35442986	0.92[ASN][1000 genomes]
rs3733255	0.81[ASN][1000 genomes]
rs3733256	0.81[ASN][1000 genomes]
rs4379080	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4524416	0.97[EUR][1000 genomes]
rs56696020	0.87[ASN][1000 genomes]
rs60169811	0.87[ASN][1000 genomes]
rs62318913	0.98[EUR][1000 genomes]
rs6828078	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6849653	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72655511	0.97[EUR][1000 genomes]
rs72655512	0.97[EUR][1000 genomes]
rs72655515	0.97[EUR][1000 genomes]
rs73825885	0.95[ASN][1000 genomes]
rs73826318	0.87[ASN][1000 genomes]
rs73826361	0.92[ASN][1000 genomes]
rs7662679	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7683914	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77008400-77011200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:77008400-77011200	Weak transcription	HMEC	breast
3	chr4:77008400-77011400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:77008400-77014200	Weak transcription	Pancreas	Pancrea
5	chr4:77008600-77011200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:77008600-77011200	Weak transcription	K562	blood
7	chr4:77008600-77011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:77008600-77011600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:77008600-77011600	Weak transcription	Osteobl	bone
10	chr4:77008600-77016800	Weak transcription	Psoas Muscle	Psoas
11	chr4:77008800-77011200	Weak transcription	NHEK	skin
12	chr4:77008800-77011600	Weak transcription	Fetal Heart	heart
13	chr4:77009000-77011400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:77009000-77011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:77009000-77011600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:77009400-77011200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:77009400-77011400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:77009400-77011800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:77010400-77011400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:77010400-77012200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr4:77010400-77012200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr4:77010400-77012200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr4:77010400-77012400	Enhancers	Primary hematopoietic stem cells	blood
24	chr4:77010400-77012800	Enhancers	Hela-S3	cervix
25	chr4:77010600-77010800	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr4:77010600-77012000	Enhancers	HUVEC	blood vessel
27	chr4:77010600-77012400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links