Variant report

Variant	rs7436661
Chromosome Location	chr4:77114273-77114274
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77108730..77110793-chr4:77112512..77115192,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11937264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1348209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372410	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1372411	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1542092	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1542093	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1542094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001534	0.84[ASN][1000 genomes]
rs17001542	0.84[ASN][1000 genomes]
rs17001551	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17001559	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17001593	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17001598	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17001601	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17001606	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17001633	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2165587	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28370991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35442986	0.84[ASN][1000 genomes]
rs3733255	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3733256	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4241585	0.84[AFR][1000 genomes]
rs4416503	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4639101	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73826361	0.84[ASN][1000 genomes]
rs7436214	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461558	chr4:77033725-77115553	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv594694	chr4:77033725-77115553	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77090200-77114800	Weak transcription	Hela-S3	cervix
2	chr4:77097400-77115000	Weak transcription	NH-A	brain
3	chr4:77097600-77119600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:77105600-77115000	Weak transcription	Fetal Heart	heart
5	chr4:77107800-77114800	Weak transcription	Colonic Mucosa	Colon
6	chr4:77109800-77117400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:77110200-77114400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:77110200-77117000	Strong transcription	Primary T cells from cord blood	blood
9	chr4:77110400-77114600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:77110600-77116600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:77111000-77118000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr4:77111200-77115200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:77111400-77114400	Strong transcription	Placenta	Placenta
14	chr4:77111400-77115000	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr4:77111600-77114600	Strong transcription	Osteobl	bone
16	chr4:77112000-77114600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:77112000-77115000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:77112200-77114800	Strong transcription	NHLF	lung
19	chr4:77112400-77114400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr4:77112400-77114400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr4:77112400-77114600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:77112400-77114600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr4:77112400-77114600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:77112400-77114800	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:77112400-77115200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr4:77112400-77115200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:77112400-77115400	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:77112400-77117000	Genic enhancers	Brain Substantia Nigra	brain
29	chr4:77112600-77114400	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr4:77112600-77114600	Strong transcription	Pancreatic Islets	Pancreatic Islet
31	chr4:77112600-77114800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr4:77112600-77114800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:77112600-77115000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:77112600-77115200	Strong transcription	Aorta	Aorta
35	chr4:77112600-77115400	Genic enhancers	Gastric	stomach
36	chr4:77112600-77116200	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr4:77112600-77117000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr4:77113000-77114800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
39	chr4:77113000-77114800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
40	chr4:77113000-77115400	Genic enhancers	Left Ventricle	heart
41	chr4:77113000-77115400	Genic enhancers	Pancreas	Pancrea
42	chr4:77113000-77117000	Strong transcription	Rectal Smooth Muscle	rectum
43	chr4:77113000-77117200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr4:77113000-77117400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr4:77113200-77114400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr4:77113200-77114600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
47	chr4:77113200-77115600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:77113200-77115600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
49	chr4:77113200-77115800	Strong transcription	Fetal Brain Female	brain
50	chr4:77113200-77116000	Strong transcription	Primary T helper naive cells from peripheral blood	blood

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