Variant report

Variant	rs7436214
Chromosome Location	chr4:77122507-77122508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77122331..77124750-chr4:77227129..77228896,2	MCF-7	breast:
2	chr4:77115676..77118604-chr4:77122425..77126369,3	MCF-7	breast:
3	chr4:77122190..77124913-chr4:77147273..77149332,2	K562	blood:
4	chr4:77118780..77124053-chr4:77134347..77137767,5	MCF-7	breast:
5	chr4:77120877..77123601-chr4:77133534..77136298,3	MCF-7	breast:
6	chr4:77114541..77118897-chr4:77119397..77123368,6	K562	blood:
7	chr4:77122262..77124788-chr4:77127198..77129570,2	K562	blood:
8	chr4:77119760..77123050-chr4:77133589..77135332,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000118804	Chromatin interaction
ENSG00000189157	Chromatin interaction
ENSG00000138760	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11937264	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11938195	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1348209	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1372410	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1465923	0.82[JPT][hapmap]
rs1542092	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1542095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17001391	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17001392	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17001393	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17001395	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs17001396	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17001398	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17001534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17001542	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17001551	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17001559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001593	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17001633	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2165587	0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370991	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35442986	0.84[ASN][1000 genomes]
rs3733255	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3733256	0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4416503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856609	0.86[JPT][hapmap]
rs73826361	0.84[ASN][1000 genomes]
rs7436661	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7682766	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799666	chr4:77119942-77129568	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77113200-77134000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77113600-77134200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:77114800-77122800	Enhancers	Psoas Muscle	Psoas
4	chr4:77115400-77122600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:77116600-77122600	Enhancers	Fetal Thymus	thymus
6	chr4:77117000-77122800	Enhancers	Small Intestine	intestine
7	chr4:77117000-77134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:77117200-77129200	Enhancers	Liver	Liver
9	chr4:77117400-77122600	Enhancers	Thymus	Thymus
10	chr4:77117400-77132800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:77117800-77122800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:77118200-77122600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:77118800-77122600	Enhancers	Fetal Muscle Leg	muscle
14	chr4:77118800-77123000	Enhancers	Stomach Mucosa	stomach
15	chr4:77118800-77124200	Enhancers	Fetal Intestine Large	intestine
16	chr4:77118800-77125400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr4:77119400-77122600	Enhancers	Gastric	stomach
18	chr4:77119400-77123200	Enhancers	HepG2	liver
19	chr4:77119800-77122800	Enhancers	Placenta	Placenta
20	chr4:77119800-77123000	Enhancers	Brain Germinal Matrix	brain
21	chr4:77119800-77127600	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr4:77120000-77122600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr4:77120000-77122600	Enhancers	HSMM	muscle
24	chr4:77120000-77122800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:77120000-77130200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:77120200-77122600	Enhancers	Fetal Brain Male	brain
27	chr4:77120200-77123000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:77120200-77123000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr4:77120200-77129400	Enhancers	Brain Substantia Nigra	brain
30	chr4:77120200-77129600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr4:77120400-77123400	Enhancers	Fetal Brain Female	brain
32	chr4:77120400-77124800	Enhancers	Brain Anterior Caudate	brain
33	chr4:77120400-77129200	Weak transcription	NHEK	skin
34	chr4:77120400-77129400	Weak transcription	Hela-S3	cervix
35	chr4:77120400-77129800	Weak transcription	Dnd41	blood
36	chr4:77120800-77123200	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr4:77121000-77128200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:77121000-77129600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:77121200-77122600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr4:77121200-77124800	Enhancers	Brain Angular Gyrus	brain
41	chr4:77121200-77127400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:77121200-77129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:77121400-77122600	Enhancers	Primary B cells from cord blood	blood
44	chr4:77121400-77122600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:77121400-77122600	Enhancers	Adipose Nuclei	Adipose
46	chr4:77121400-77122600	Enhancers	Osteobl	bone
47	chr4:77121400-77123000	Enhancers	Fetal Intestine Small	intestine
48	chr4:77121400-77123000	Enhancers	Stomach Smooth Muscle	stomach
49	chr4:77121400-77123800	Enhancers	Duodenum Mucosa	Duodenum
50	chr4:77121400-77124800	Enhancers	Skeletal Muscle Female	skeletal muscle

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