Variant report

Variant	rs28373225
Chromosome Location	chr9:71158756-71158757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10114981	1.00[AMR][1000 genomes]
rs10117398	1.00[AMR][1000 genomes]
rs10120745	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123762	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123848	0.96[AFR][1000 genomes]
rs10123970	1.00[AMR][1000 genomes]
rs10124105	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11141210	1.00[AMR][1000 genomes]
rs12335607	1.00[AMR][1000 genomes]
rs12341862	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343790	1.00[AMR][1000 genomes]
rs12346301	1.00[AMR][1000 genomes]
rs12348463	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349403	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351373	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs187844	1.00[AMR][1000 genomes]
rs1928255	1.00[AMR][1000 genomes]
rs28515496	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539619	1.00[AMR][1000 genomes]
rs28540360	1.00[AMR][1000 genomes]
rs28659862	0.80[AFR][1000 genomes]
rs28685588	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60797267	1.00[AMR][1000 genomes]
rs7036790	1.00[AMR][1000 genomes]
rs73449507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71139600-71161600	Weak transcription	Spleen	Spleen
2	chr9:71145800-71161600	Weak transcription	Gastric	stomach
3	chr9:71152200-71161600	Weak transcription	Right Ventricle	heart
4	chr9:71152200-71170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:71153800-71161800	Weak transcription	Psoas Muscle	Psoas
6	chr9:71154200-71161600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr9:71155600-71161400	Weak transcription	Lung	lung
8	chr9:71155800-71161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:71156600-71161400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:71156600-71161600	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:71156600-71161600	Weak transcription	HepG2	liver
12	chr9:71156800-71161400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:71157000-71160000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:71157000-71160000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:71157000-71161400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:71157000-71161400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:71157200-71161400	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:71157200-71161400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr9:71157200-71165600	Weak transcription	Stomach Mucosa	stomach
20	chr9:71157200-71166000	Weak transcription	Colonic Mucosa	Colon
21	chr9:71157400-71160200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:71157400-71160600	Weak transcription	Right Atrium	heart
23	chr9:71157400-71161400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr9:71157400-71161400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:71157400-71161400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:71157400-71166000	Weak transcription	Fetal Heart	heart
27	chr9:71157600-71161400	Weak transcription	Left Ventricle	heart
28	chr9:71157800-71159800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr9:71158200-71161600	Weak transcription	Fetal Intestine Large	intestine

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