Variant report

Variant	rs28515496
Chromosome Location	chr9:71132765-71132766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10114981	1.00[AMR][1000 genomes]
rs10117398	1.00[AMR][1000 genomes]
rs10120745	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123762	1.00[AMR][1000 genomes]
rs10123970	1.00[AMR][1000 genomes]
rs10124105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11141210	1.00[AMR][1000 genomes]
rs12335607	1.00[AMR][1000 genomes]
rs12341862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343790	1.00[AMR][1000 genomes]
rs12346301	1.00[AMR][1000 genomes]
rs12348463	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12351373	1.00[AMR][1000 genomes]
rs187844	1.00[AMR][1000 genomes]
rs1928255	1.00[AMR][1000 genomes]
rs28373225	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539619	1.00[AMR][1000 genomes]
rs28540360	1.00[AMR][1000 genomes]
rs28685588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60797267	1.00[AMR][1000 genomes]
rs7036790	1.00[AMR][1000 genomes]
rs73449507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:71122200-71133200	Weak transcription	Ovary	ovary
3	chr9:71124800-71133200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:71127400-71132800	Weak transcription	Fetal Lung	lung
5	chr9:71127400-71132800	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:71129800-71132800	Weak transcription	Psoas Muscle	Psoas
7	chr9:71130200-71148000	Weak transcription	HSMMtube	muscle
8	chr9:71130400-71132800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:71130600-71132800	Weak transcription	Aorta	Aorta
10	chr9:71130600-71144400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:71130600-71144800	Weak transcription	Left Ventricle	heart
12	chr9:71130800-71145400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:71131000-71152600	Weak transcription	NHLF	lung
14	chr9:71131400-71136800	Weak transcription	Right Atrium	heart
15	chr9:71131600-71145400	Weak transcription	Right Ventricle	heart
16	chr9:71131800-71132800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:71131800-71133200	ZNF genes & repeats	Fetal Stomach	stomach
18	chr9:71132400-71134000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:71132600-71133400	ZNF genes & repeats	Colon Smooth Muscle	Colon

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