Variant report

Variant rs28375945
Chromosome Location chr15:58553988-58553989
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:25 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:58547800-58557000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr15:58549600-58558600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr15:58550200-58554000 Enhancers HMEC breast
4 chr15:58550400-58561800 Weak transcription Liver Liver
5 chr15:58551600-58554000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr15:58551800-58554400 Enhancers Placenta Placenta
7 chr15:58552400-58554000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
8 chr15:58552400-58554200 Enhancers Breast Myoepithelial Primary Cells Breast
9 chr15:58552400-58554400 Enhancers Psoas Muscle Psoas
10 chr15:58552600-58554000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr15:58552800-58554200 Enhancers Left Ventricle heart
12 chr15:58553200-58554000 Enhancers NHEK skin
13 chr15:58553200-58555000 Weak transcription K562 blood
14 chr15:58553200-58562200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr15:58553400-58555600 Weak transcription Primary T cells from cord blood blood
16 chr15:58553400-58557000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr15:58553400-58562400 Weak transcription Spleen Spleen
18 chr15:58553600-58554000 Enhancers Right Ventricle heart
19 chr15:58553600-58556600 Weak transcription Placenta Amnion Placenta Amnion
20 chr15:58553600-58559000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr15:58553600-58559000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr15:58553800-58554000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
23 chr15:58553800-58554200 Enhancers Skeletal Muscle Male skeletal muscle
24 chr15:58553800-58557200 Enhancers Right Atrium heart
25 chr15:58553800-58557200 Enhancers Hela-S3 cervix

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