Variant report

Variant	rs28378521
Chromosome Location	chr4:127879253-127879254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127686781..127688466-chr4:127878771..127880801,2	K562	blood:
2	chr4:127655542..127661109-chr4:127874426..127880524,8	K562	blood:
3	chr4:127652170..127654874-chr4:127875964..127880032,4	K562	blood:
4	chr4:127875956..127880982-chr4:127903671..127906140,4	K562	blood:
5	chr4:127875427..127880054-chr4:127888874..127892075,5	K562	blood:
6	chr4:127836086..127837603-chr4:127876931..127879526,2	K562	blood:
7	chr4:127878020..127880323-chr4:127908771..127910687,2	K562	blood:
8	chr4:127771841..127773556-chr4:127876449..127879979,3	K562	blood:
9	chr4:127876070..127879293-chr4:127896514..127899164,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10005522	1.00[AFR][1000 genomes]
rs10471032	1.00[AFR][1000 genomes]
rs11098913	1.00[AFR][1000 genomes]
rs1480912	1.00[AFR][1000 genomes]
rs28366863	1.00[AFR][1000 genomes]
rs28432794	1.00[AFR][1000 genomes]
rs28434627	1.00[AFR][1000 genomes]
rs28473454	1.00[AFR][1000 genomes]
rs28479022	1.00[AFR][1000 genomes]
rs28485376	1.00[AFR][1000 genomes]
rs28552074	1.00[AFR][1000 genomes]
rs28562660	1.00[AFR][1000 genomes]
rs28572072	1.00[AFR][1000 genomes]
rs28758907	1.00[AFR][1000 genomes]
rs9998369	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127873000-127879600	Active TSS	K562	blood
2	chr4:127879000-127879400	Enhancers	Fetal Stomach	stomach
3	chr4:127879000-127879600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:127879000-127879600	Enhancers	Fetal Heart	heart
5	chr4:127879000-127880400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:127879000-127880800	Enhancers	Fetal Lung	lung
7	chr4:127879200-127879400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:127879200-127879600	Enhancers	Fetal Brain Male	brain
9	chr4:127879200-127880200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:127879200-127880800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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