Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10005522	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10020135	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10471032	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11098913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331820	1.00[EUR][1000 genomes]
rs1480912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366863	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28378521	1.00[AFR][1000 genomes]
rs28432794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28434627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452137	1.00[EUR][1000 genomes]
rs28479022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28485376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28546828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552074	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28562660	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28572072	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28587364	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28726160	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28758907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289455	1.00[EUR][1000 genomes]
rs9992427	1.00[EUR][1000 genomes]
rs9998369	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128053400-128061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:128059200-128060000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search: