Variant report

Variant	rs28587364
Chromosome Location	chr4:127967626-127967627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127963640..127966390-chr4:127966752..127969246,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10005522	1.00[EUR][1000 genomes]
rs10020135	1.00[EUR][1000 genomes]
rs10471032	1.00[EUR][1000 genomes]
rs11098913	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331820	1.00[EUR][1000 genomes]
rs1480912	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366863	1.00[EUR][1000 genomes]
rs28432794	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28434627	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452137	1.00[EUR][1000 genomes]
rs28473454	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28479022	1.00[EUR][1000 genomes]
rs28485376	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28546828	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552074	1.00[EUR][1000 genomes]
rs28562660	1.00[EUR][1000 genomes]
rs28572072	1.00[EUR][1000 genomes]
rs28726160	1.00[EUR][1000 genomes]
rs28758907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289455	1.00[EUR][1000 genomes]
rs9992427	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9998369	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127965200-127967800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:127965200-127970800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:127965400-127968000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr4:127965400-127968200	Enhancers	Dnd41	blood
5	chr4:127965400-127968800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:127965600-127967800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:127965800-127971200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:127966000-127968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:127966000-127968800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:127966000-127971000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:127966600-127969000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:127966600-127972800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:127967000-127976200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:127967400-127969600	Weak transcription	NH-A	brain
15	chr4:127967400-127969800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:127967600-127968800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:127967600-127969000	Weak transcription	NHLF	lung
18	chr4:127967600-127969600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:127967600-127969800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:127967600-127970400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:127967600-127976600	Weak transcription	NHDF-Ad	bronchial
22	chr4:127967600-127982000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links