Variant report

Variant	rs28452137
Chromosome Location	chr4:127927866-127927867
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10005522	1.00[EUR][1000 genomes]
rs10020135	1.00[EUR][1000 genomes]
rs10471032	1.00[EUR][1000 genomes]
rs11098913	1.00[EUR][1000 genomes]
rs12331820	1.00[EUR][1000 genomes]
rs1480912	1.00[EUR][1000 genomes]
rs28366863	1.00[EUR][1000 genomes]
rs28432794	1.00[EUR][1000 genomes]
rs28434627	1.00[EUR][1000 genomes]
rs28473454	1.00[EUR][1000 genomes]
rs28479022	1.00[EUR][1000 genomes]
rs28485376	1.00[EUR][1000 genomes]
rs28546828	1.00[EUR][1000 genomes]
rs28552074	1.00[EUR][1000 genomes]
rs28562660	1.00[EUR][1000 genomes]
rs28572072	1.00[EUR][1000 genomes]
rs28587364	1.00[EUR][1000 genomes]
rs28758907	1.00[EUR][1000 genomes]
rs9992427	1.00[EUR][1000 genomes]
rs9998369	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830055	chr4:127794875-127993821	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879913	chr4:127844803-127948196	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127926600-127929200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:127927000-127928200	Enhancers	Brain Germinal Matrix	brain
3	chr4:127927200-127928000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:127927600-127928000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:127927600-127928000	Enhancers	Fetal Brain Male	brain
6	chr4:127927800-127928800	Enhancers	NHDF-Ad	bronchial
7	chr4:127927800-127929200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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