Variant report

Variant	rs9992427
Chromosome Location	chr4:128062650-128062651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10005522	1.00[EUR][1000 genomes]
rs10020135	1.00[EUR][1000 genomes]
rs10033566	0.85[AFR][1000 genomes]
rs10471032	1.00[EUR][1000 genomes]
rs11098913	1.00[EUR][1000 genomes]
rs12331820	1.00[EUR][1000 genomes]
rs12503518	0.85[AFR][1000 genomes]
rs12503648	0.85[AFR][1000 genomes]
rs1480912	1.00[EUR][1000 genomes]
rs28366863	1.00[EUR][1000 genomes]
rs28432794	1.00[EUR][1000 genomes]
rs28434627	1.00[EUR][1000 genomes]
rs28452137	1.00[EUR][1000 genomes]
rs28473454	1.00[EUR][1000 genomes]
rs28479022	1.00[EUR][1000 genomes]
rs28485376	1.00[EUR][1000 genomes]
rs28546828	1.00[EUR][1000 genomes]
rs28552074	1.00[EUR][1000 genomes]
rs28562660	1.00[EUR][1000 genomes]
rs28572072	1.00[EUR][1000 genomes]
rs28587364	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28726160	1.00[EUR][1000 genomes]
rs28758907	1.00[EUR][1000 genomes]
rs4289455	1.00[EUR][1000 genomes]
rs4385081	0.83[AFR][1000 genomes]
rs9998369	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128060000-128063000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:128061000-128063400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:128061000-128063600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:128061000-128065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:128061200-128063600	Enhancers	Hela-S3	cervix
6	chr4:128061200-128064000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:128061200-128067800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:128061400-128062800	Weak transcription	NHLF	lung
9	chr4:128061800-128063000	Weak transcription	NH-A	brain
10	chr4:128062000-128063800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:128062400-128064000	Enhancers	NHDF-Ad	bronchial
12	chr4:128062600-128062800	Enhancers	Small Intestine	intestine
13	chr4:128062600-128063000	Enhancers	Osteobl	bone
14	chr4:128062600-128063200	Enhancers	Adipose Nuclei	Adipose
15	chr4:128062600-128063600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:128062600-128064200	Enhancers	Stomach Smooth Muscle	stomach
17	chr4:128062600-128066000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:128062600-128066800	Enhancers	HSMMtube	muscle
19	chr4:128062600-128067000	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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