Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10005522	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10020135	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10471032	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11098913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331820	1.00[EUR][1000 genomes]
rs1480912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28366863	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28378521	1.00[AFR][1000 genomes]
rs28432794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28434627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452137	1.00[EUR][1000 genomes]
rs28473454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28479022	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28546828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552074	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28562660	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28572072	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28587364	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28726160	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28758907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4289455	1.00[EUR][1000 genomes]
rs9992427	1.00[EUR][1000 genomes]
rs9998369	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128038600-128042000	Weak transcription	Fetal Brain Male	brain
2	chr4:128039200-128042200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:128040400-128041600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:128040400-128041600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:128040400-128043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:128040600-128041400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:128040600-128041600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:128040600-128041600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:128040600-128044400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:128040600-128046400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr4:128040800-128041400	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search: