Variant report
| Variant | rs10471032 |
|---|---|
| Chromosome Location | chr4:128096940-128096941 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:128093003..128095000-chr4:128096462..128098842,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10020135 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11098913 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12331820 | 1.00[EUR][1000 genomes] |
| rs1480912 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28366863 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28378521 | 1.00[AFR][1000 genomes] |
| rs28432794 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28434627 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28452137 | 1.00[EUR][1000 genomes] |
| rs28473454 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28479022 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28485376 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28546828 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28562660 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28572072 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28587364 | 1.00[EUR][1000 genomes] |
| rs28726160 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28758907 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4289455 | 1.00[EUR][1000 genomes] |
| rs9992427 | 1.00[EUR][1000 genomes] |
| rs9998369 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879914 | chr4:128005362-128123638 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:128096200-128099600 | Weak transcription | Colon Smooth Muscle | Colon |
