Variant report

Variant	rs28381686
Chromosome Location	chr11:102736647-102736648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12286876	1.00[AMR][1000 genomes]
rs17860569	1.00[AMR][1000 genomes]
rs17860956	1.00[AMR][1000 genomes]
rs17860996	1.00[AMR][1000 genomes]
rs17879947	1.00[AMR][1000 genomes]
rs28381671	1.00[AMR][1000 genomes]
rs3025060	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025073	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025081	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35931741	1.00[AMR][1000 genomes]
rs7102181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102734400-102736800	Enhancers	Rectal Smooth Muscle	rectum
2	chr11:102735800-102740000	Weak transcription	Stomach Mucosa	stomach
3	chr11:102736000-102738600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:102736000-102738600	Weak transcription	Adipose Nuclei	Adipose
5	chr11:102736200-102738600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:102736200-102738600	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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