Variant report

Variant	rs3025073
Chromosome Location	chr11:102708659-102708660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11225376	1.00[YRI][hapmap]
rs12286876	1.00[AMR][1000 genomes]
rs17357454	1.00[YRI][hapmap]
rs17860569	1.00[AMR][1000 genomes]
rs17860956	1.00[AMR][1000 genomes]
rs17860996	1.00[AMR][1000 genomes]
rs17879947	1.00[AMR][1000 genomes]
rs28381671	1.00[AMR][1000 genomes]
rs28381686	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025060	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35931741	1.00[AMR][1000 genomes]
rs7102181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102707400-102708800	Weak transcription	Stomach Mucosa	stomach
2	chr11:102707800-102713400	Weak transcription	NHEK	skin
3	chr11:102707800-102713800	Weak transcription	NHDF-Ad	bronchial
4	chr11:102708600-102713200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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