Variant report

Variant	rs3025081
Chromosome Location	chr11:102705963-102705964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11225376	1.00[YRI][hapmap]
rs12286876	1.00[AMR][1000 genomes]
rs17357454	1.00[YRI][hapmap]
rs17860569	1.00[AMR][1000 genomes]
rs17860956	1.00[AMR][1000 genomes]
rs17860996	1.00[AMR][1000 genomes]
rs17879947	1.00[AMR][1000 genomes]
rs28381671	1.00[AMR][1000 genomes]
rs28381686	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025060	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025073	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35931741	1.00[AMR][1000 genomes]
rs7102181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102700600-102707200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:102701200-102706600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:102701600-102706600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:102701800-102706600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:102701800-102706600	Weak transcription	NHEK	skin
6	chr11:102702800-102706000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:102702800-102706200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:102702800-102706200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:102702800-102706400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:102702800-102706400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:102702800-102706600	Weak transcription	Osteobl	bone
12	chr11:102703000-102706400	Weak transcription	NHLF	lung
13	chr11:102703000-102706600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:102703200-102706600	Weak transcription	Adipose Nuclei	Adipose
15	chr11:102703200-102706600	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:102703200-102706600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:102703600-102706400	Weak transcription	Fetal Intestine Large	intestine
18	chr11:102704200-102708600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:102704600-102706400	Weak transcription	NHDF-Ad	bronchial
20	chr11:102704800-102706600	Weak transcription	HMEC	breast
21	chr11:102705600-102706000	Weak transcription	Fetal Intestine Small	intestine
22	chr11:102705800-102706200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:102705800-102706200	Enhancers	Stomach Mucosa	stomach

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