Variant report

Variant	rs3025060
Chromosome Location	chr11:102714673-102714674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:102714315-102714680	MCF10A-Er-Src	breast:	n/a	chr11:102714531-102714552
2	FOS	chr11:102714249-102714690	MCF10A-Er-Src	breast:	n/a	chr11:102714404-102714415
3	GATA3	chr11:102714228-102714852	SK-N-SH	brain:	n/a	n/a
4	FOS	chr11:102714248-102714694	MCF10A-Er-Src	breast:	n/a	chr11:102714404-102714415
5	PBX3	chr11:102714146-102714744	SK-N-SH	brain:	n/a	chr11:102714370-102714379

Variant related genes	Relation type
MMP3	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11225376	1.00[YRI][hapmap]
rs12286876	1.00[AMR][1000 genomes]
rs17357454	1.00[YRI][hapmap]
rs17860569	1.00[AMR][1000 genomes]
rs17860956	1.00[AMR][1000 genomes]
rs17860996	1.00[AMR][1000 genomes]
rs17879947	1.00[AMR][1000 genomes]
rs28381671	1.00[AMR][1000 genomes]
rs28381686	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025073	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3025081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35931741	1.00[AMR][1000 genomes]
rs7102181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898335	chr11:102682285-102866158	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102711600-102715200	Weak transcription	Stomach Mucosa	stomach
2	chr11:102713800-102714800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:102713800-102714800	Enhancers	Hela-S3	cervix
4	chr11:102713800-102715000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:102713800-102715000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:102713800-102715200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:102714000-102715000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:102714000-102715000	Enhancers	NHLF	lung
9	chr11:102714000-102715200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:102714200-102715200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:102714400-102715400	Enhancers	NHDF-Ad	bronchial
12	chr11:102714400-102716000	Enhancers	NHEK	skin
13	chr11:102714400-102716800	Weak transcription	Fetal Stomach	stomach
14	chr11:102714400-102720000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:102714400-102721600	Weak transcription	NH-A	brain
16	chr11:102714600-102716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:102714600-102719400	Weak transcription	HMEC	breast
18	chr11:102714600-102719800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:102714600-102719800	Weak transcription	Osteobl	bone
20	chr11:102714600-102720000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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