Variant report

Variant	rs28397277
Chromosome Location	chr6:31164943-31164944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:506)
CpG islands
(count:244)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:506 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:31164679-31165141	MCF-7	breast:	n/a	chr6:31164911-31164927
2	MAX	chr6:31164725-31165059	Hela-S3	cervix:	n/a	chr6:31164872-31164883
3	POLR2A	chr6:31164617-31166158	GM12878	blood:	n/a	n/a
4	TBL1XR1	chr6:31164802-31164965	K562	blood:	n/a	n/a
5	STAT3	chr6:31164702-31165024	MCF10A-Er-Src	breast:	n/a	n/a
6	SMC3	chr6:31164701-31166097	Hela-S3	cervix:	n/a	n/a
7	GTF2F1	chr6:31164837-31164958	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAZ	chr6:31164752-31166133	K562	blood:	n/a	chr6:31165518-31165528 chr6:31164872-31164883
9	POLR2A	chr6:31164795-31164984	A549	lung:	n/a	n/a
10	ATF1	chr6:31164775-31165088	K562	blood:	n/a	n/a
11	CEBPB	chr6:31164757-31165055	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr6:31164791-31166135	GM15510	blood:	n/a	n/a
13	CTCF	chr6:31164800-31164950	HA-sp	spinal cord:	n/a	chr6:31164911-31164927
14	CTCF	chr6:31164840-31164990	GM12869	blood:	n/a	chr6:31164911-31164927
15	REST	chr6:31164571-31166253	H1-neurons	neurons:	n/a	chr6:31165699-31165712 chr6:31165878-31165885
16	CTCF	chr6:31164840-31164990	HMF	breast:	n/a	chr6:31164911-31164927
17	POLR2A	chr6:31164782-31165196	GM12891	blood:	n/a	n/a
18	TFAP2C	chr6:31164706-31166086	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr6:31164785-31165031	A549	lung:	n/a	chr6:31164911-31164927
20	YY1	chr6:31164750-31166153	K562	blood:	n/a	n/a
21	USF1	chr6:31164618-31165012	SK-N-SH_RA	brain:	n/a	chr6:31164872-31164883
22	HEY1	chr6:31164598-31165164	K562	blood:	n/a	n/a
23	ARID3A	chr6:31164771-31165105	HepG2	liver:	n/a	n/a
24	POU2F2	chr6:31164689-31165222	GM12891	blood:	n/a	n/a
25	POLR2A	chr6:31164673-31165190	HL-60	blood:	n/a	n/a
26	CTCF	chr6:31164860-31165010	GM12866	blood:	n/a	chr6:31164911-31164927
27	CTCF	chr6:31164840-31164990	Caco-2	colon:	n/a	chr6:31164911-31164927
28	CTCF	chr6:31164820-31164970	GM12864	blood:	n/a	chr6:31164911-31164927
29	CBX3	chr6:31164689-31165043	K562	blood:	n/a	n/a
30	RAD21	chr6:31164605-31165675	SK-N-SH	brain:	n/a	chr6:31165440-31165454
31	GABPA	chr6:31164702-31166016	MCF-7	breast:	n/a	n/a
32	HCFC1	chr6:31164487-31165093	Hela-S3	cervix:	n/a	n/a
33	YY1	chr6:31164674-31165101	GM12878	blood:	n/a	n/a
34	BACH1	chr6:31164766-31164971	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr6:31164880-31165030	GM12870	blood:	n/a	chr6:31164911-31164927
36	MAX	chr6:31164704-31165106	K562	blood:	n/a	chr6:31164872-31164883
37	CTCF	chr6:31164794-31165028	ECC-1	luminal epithelium:	n/a	chr6:31164911-31164927
38	FOXM1	chr6:31164585-31165150	GM12878	blood:	n/a	n/a
39	MXI1	chr6:31164727-31165064	HepG2	liver:	n/a	n/a
40	MXI1	chr6:31164720-31165012	Hela-S3	cervix:	n/a	n/a
41	RAD21	chr6:31164713-31165441	GM12878	blood:	n/a	n/a
42	CTCF	chr6:31164800-31164950	HMEC	breast:	n/a	chr6:31164911-31164927
43	MAX	chr6:31164703-31165154	A549	lung:	n/a	chr6:31164872-31164883
44	POLR2A	chr6:31163839-31166273	SK-N-MC	brain:	n/a	n/a
45	POLR2A	chr6:31164717-31166137	K562	blood:	n/a	n/a
46	POLR2A	chr6:31164814-31165149	HUVEC	blood vessel:	n/a	n/a
47	MBD4	chr6:31164662-31165091	HepG2	liver:	n/a	n/a
48	ATF3	chr6:31164740-31165036	HepG2	liver:	n/a	n/a
49	CTCF	chr6:31164840-31164990	HBMEC	blood vessel:	n/a	chr6:31164911-31164927
50	CTCF	chr6:31164776-31165041	Hela-S3	cervix:	n/a	chr6:31164911-31164927

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31164924-31164974	HL-60	blood:	n/a
2	chr6:31164914-31164964	GM12878	blood:	n/a
3	chr6:31164921-31164971	HEEpiC	esophagus:	n/a
4	chr6:31164914-31164964	HCPEpiC	choroid plexus:	n/a
5	chr6:31164921-31164971	PANC-1	pancreas:	n/a
6	chr6:31164921-31164971	NH-A	brain:	n/a
7	chr6:31164914-31164964	AG10803	skin:	n/a
8	chr6:31164914-31164964	HEEpiC	esophagus:	n/a
9	chr6:31164924-31164974	NB4	blood:	n/a
10	chr6:31164916-31164966	MCF10A-Er-Src	breast:	n/a
11	chr6:31164924-31164974	ProgFib	skin:	n/a
12	chr6:31164921-31164971	GM12892	blood:	n/a
13	chr6:31164916-31164966	HAEpiC	amniotic membrane:	n/a
14	chr6:31164924-31164974	BJ	skin:	n/a
15	chr6:31164914-31164964	HIPEpiC	eye:	n/a
16	chr6:31164921-31164971	RPTEC	kidney:	n/a
17	chr6:31164924-31164974	AoSMC	blood vessel:	n/a
18	chr6:31164916-31164966	U87	brain:	n/a
19	chr6:31164921-31164971	SK-N-MC	brain:	n/a
20	chr6:31164921-31164971	SK-N-SH	brain:	n/a
21	chr6:31164914-31164964	NHDF-neo	bronchial:	n/a
22	chr6:31164916-31164966	HepG2	liver:	n/a
23	chr6:31164916-31164966	HEEpiC	esophagus:	n/a
24	chr6:31164914-31164964	AG09319	gingival:	n/a
25	chr6:31164924-31164974	HIPEpiC	eye:	n/a
26	chr6:31164914-31164964	NHBE	bronchial:	n/a
27	chr6:31164916-31164966	AoSMC	blood vessel:	n/a
28	chr6:31164914-31164964	HRPEpiC	eye:	n/a
29	chr6:31164921-31164971	HAEpiC	amniotic membrane:	n/a
30	chr6:31164921-31164971	AG04450	lung:	fetal
31	chr6:31164924-31164974	AG04450	lung:	fetal
32	chr6:31164921-31164971	ovcar-3	ovarian:	n/a
33	chr6:31164924-31164974	Caco-2	colon:	n/a
34	chr6:31164916-31164966	AG04449	skin:	fetal
35	chr6:31164921-31164971	U87	brain:	n/a
36	chr6:31164916-31164966	IMR90	lung:	fetal
37	chr6:31164921-31164971	HMEC	breast:	n/a
38	chr6:31164916-31164966	PFSK-1	brain:	n/a
39	chr6:31164921-31164971	NHBE	bronchial:	n/a
40	chr6:31164924-31164974	HCT-116	colon:	n/a
41	chr6:31164921-31164971	HepG2	liver:	n/a
42	chr6:31164924-31164974	H1-hESC	embryonic stem cell:	embryo
43	chr6:31164914-31164964	ProgFib	skin:	n/a
44	chr6:31164916-31164966	AG09309	skin:	n/a
45	chr6:31164924-31164974	GM12878	blood:	n/a
46	chr6:31164921-31164971	HCM	heart:	n/a
47	chr6:31164924-31164974	HNPCEpiC	eye:	n/a
48	chr6:31164916-31164966	GM19239	blood:	n/a
49	chr6:31164914-31164964	A549	lung:	n/a
50	chr6:31164921-31164971	AG04449	skin:	fetal

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31136027..31137664-chr6:31162988..31165326,2	MCF-7	breast:
2	chr6:31164421..31165403-chr6:31334396..31335415,9	MCF-7	breast:
3	chr6:31164797..31165692-chr6:31334361..31335283,4	K562	blood:
4	chr6:31164859..31165402-chr6:31336129..31336993,3	MCF-7	breast:
5	chr6:31163696..31166940-chr6:31333321..31336541,7	MCF-7	breast:
6	chr11:5177158..5178134-chr6:31164885..31165449,2	K562	blood:
7	chr6:31164428..31165295-chr6:31333347..31334316,2	MCF-7	breast:
8	chr6:31164763..31166450-chr6:31463766..31465501,2	K562	blood:
9	chr6:31164867..31165398-chr6:31334306..31335280,3	MCF-7	breast:
10	chr19:50380915..50381437-chr6:31164900..31165879,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HCG27	TF binding region
HCG27	CpG island
ENSG00000201680	Chromatin interaction
ENSG00000104946	Chromatin interaction
ENSG00000228432	Chromatin interaction
ENSG00000204673	Chromatin interaction

Extended variants
information (count: 137 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs1052989	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1135811	0.86[ASN][1000 genomes]
rs11381232	0.88[AFR][1000 genomes]
rs11507945	0.88[AFR][1000 genomes]
rs11961945	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11961983	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11967629	0.90[AFR][1000 genomes]
rs1265160	0.87[AFR][1000 genomes]
rs1265163	0.87[AFR][1000 genomes]
rs17191181	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17191237	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17197540	0.86[ASN][1000 genomes]
rs2394892	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28360055	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28360056	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28360057	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28360058	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28360059	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28360060	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28360061	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28360062	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28360063	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28360064	0.88[AFR][1000 genomes]
rs28360065	0.82[AFR][1000 genomes]
rs28360066	0.80[AFR][1000 genomes]
rs28360067	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs28397268	0.82[AFR][1000 genomes]
rs28397269	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28397270	0.84[AFR][1000 genomes]
rs28397271	0.85[AFR][1000 genomes]
rs28397276	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28397282	0.85[AFR][1000 genomes]
rs28397284	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28397285	0.88[AFR][1000 genomes]
rs28397286	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs28397289	0.82[ASN][1000 genomes]
rs28397293	0.88[EUR][1000 genomes]
rs28397294	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28397295	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28397296	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28397297	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28397299	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28397300	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28749548	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28749549	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28749550	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28749551	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34467061	0.80[AFR][1000 genomes]
rs34837204	0.81[AFR][1000 genomes]
rs3869117	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3887153	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4122189	0.88[AFR][1000 genomes]
rs4713441	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4713442	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6457349	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6457350	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6899874	0.88[AFR][1000 genomes]
rs6899875	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6901685	0.89[AFR][1000 genomes]
rs6907451	0.87[ASN][1000 genomes]
rs6908511	0.83[EUR][1000 genomes]
rs6908994	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6913015	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6913301	0.80[ASN][1000 genomes]
rs6913470	0.84[ASN][1000 genomes]
rs6913648	0.83[ASN][1000 genomes]
rs6913863	0.86[ASN][1000 genomes]
rs6914030	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6914393	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6914706	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914710	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6919493	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921663	0.83[AFR][1000 genomes]
rs6922077	0.89[AFR][1000 genomes]
rs6922553	0.86[AFR][1000 genomes]
rs6922756	0.84[AFR][1000 genomes]
rs6922994	0.89[AFR][1000 genomes]
rs6927253	0.85[AFR][1000 genomes]
rs6927324	0.84[ASN][1000 genomes]
rs6927444	0.81[ASN][1000 genomes]
rs6930438	0.86[ASN][1000 genomes]
rs6932070	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936474	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6936597	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6941912	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7453202	0.86[ASN][1000 genomes]
rs7745050	0.84[EUR][1000 genomes]
rs7745197	0.83[EUR][1000 genomes]
rs7745906	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7755702	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7768431	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs915660	0.90[AFR][1000 genomes]
rs9263852	0.83[AFR][1000 genomes]
rs9295957	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9295958	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9357109	0.90[AFR][1000 genomes]
rs9357113	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9357115	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9366769	0.83[AFR][1000 genomes]
rs9368662	0.85[AFR][1000 genomes]
rs9368663	0.85[AFR][1000 genomes]
rs9378115	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9380220	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9380221	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9380222	0.85[AFR][1000 genomes]
rs9380223	0.89[AFR][1000 genomes]
rs9391712	0.99[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9391818	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9394042	0.88[AFR][1000 genomes]
rs9404983	0.85[AFR][1000 genomes]
rs9405052	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9468900	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv427750	chr6:31028290-31234581	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
8	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
10	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
11	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
12	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
13	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
14	nsv1034391	chr6:31131121-31279595	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
15	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
16	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
17	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
18	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
19	esv32635	chr6:31141504-31250618	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
20	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
21	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
22	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
24	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
25	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs28397277	DDR1	Cis_1M	lymphoblastoid	RTeQTL
rs28397277	HLA-B	Cis_1M	lymphoblastoid	RTeQTL
rs28397277	TCF19	Cis_1M	lymphoblastoid	RTeQTL
rs28397277	HLA-C	Cis_1M	lymphoblastoid	RTeQTL
rs28397277	CCHCR1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31163800-31165000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:31163800-31165600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:31164200-31165000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
4	chr6:31164200-31165000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr6:31164200-31165000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
6	chr6:31164200-31165000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr6:31164200-31165000	Enhancers	Stomach Mucosa	stomach
8	chr6:31164200-31165000	Enhancers	Spleen	Spleen
9	chr6:31164200-31165000	Flanking Active TSS	Dnd41	blood
10	chr6:31164200-31167200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr6:31164400-31165000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:31164400-31165000	Flanking Active TSS	Primary B cells from cord blood	blood
13	chr6:31164400-31165000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr6:31164400-31165000	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr6:31164400-31165000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:31164400-31165000	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr6:31164400-31166600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:31164400-31166800	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr6:31164400-31166800	Active TSS	Colon Smooth Muscle	Colon
20	chr6:31164400-31166800	Active TSS	A549	lung
21	chr6:31164400-31168400	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr6:31164600-31165000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:31164600-31165000	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr6:31164600-31165000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:31164600-31165000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:31164600-31165000	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr6:31164600-31165000	Flanking Active TSS	Brain Substantia Nigra	brain
28	chr6:31164600-31165000	Flanking Active TSS	Fetal Brain Male	brain
29	chr6:31164600-31165000	Flanking Active TSS	Pancreas	Pancrea
30	chr6:31164600-31165000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:31164600-31165000	Weak transcription	Small Intestine	intestine
32	chr6:31164600-31165000	Flanking Active TSS	HepG2	liver
33	chr6:31164600-31165200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:31164600-31165400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:31164600-31165800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:31164600-31165800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:31164600-31165800	Active TSS	Brain Germinal Matrix	brain
38	chr6:31164600-31166000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:31164600-31166000	Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr6:31164600-31166000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:31164600-31166200	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr6:31164600-31166200	Active TSS	Fetal Kidney	kidney
43	chr6:31164600-31166400	Active TSS	ES-I3 Cell Line	embryonic stem cell
44	chr6:31164600-31166400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:31164600-31166400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:31164600-31166400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:31164600-31166400	Active TSS	Brain Angular Gyrus	brain
48	chr6:31164600-31166400	Active TSS	Brain Hippocampus Middle	brain
49	chr6:31164600-31166400	Active TSS	Right Ventricle	heart
50	chr6:31164600-31166400	Active TSS	HMEC	breast

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