Variant report

Variant	rs2841309
Chromosome Location	chr6:100751890-100751891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12175103	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1354685	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2066947	0.85[EUR][1000 genomes]
rs2073265	0.86[EUR][1000 genomes]
rs2224066	0.85[EUR][1000 genomes]
rs2224067	0.85[EUR][1000 genomes]
rs2841308	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4280969	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4374824	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6940893	0.86[EUR][1000 genomes]
rs8180616	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9376820	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386064	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399475	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9399482	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9496920	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030316	chr6:100733205-100759678	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100745200-100752600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:100745200-100755800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:100745600-100753800	Enhancers	HUVEC	blood vessel
4	chr6:100748400-100752400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:100748600-100752400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:100748800-100752600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:100749800-100752000	Weak transcription	A549	lung
8	chr6:100750000-100755000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:100750200-100754800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:100750400-100753200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:100751000-100752200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:100751000-100756200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:100751400-100753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:100751800-100753200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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