Variant report

Variant	rs4280969
Chromosome Location	chr6:100724638-100724639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12175103	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1354685	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2066947	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2073265	0.90[EUR][1000 genomes]
rs2224066	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2224067	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2841308	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2841309	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4374824	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6940893	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8180616	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9386064	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9399475	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399482	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9496920	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100718800-100729200	Weak transcription	NHLF	lung
2	chr6:100722000-100731200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:100723000-100729400	Weak transcription	NHEK	skin
4	chr6:100723600-100729400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:100723800-100725600	Enhancers	HUVEC	blood vessel
6	chr6:100724600-100724800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:100724600-100725600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:100724600-100726000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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