Variant report

Variant	rs9399482
Chromosome Location	chr6:100734930-100734931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12175103	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1354685	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066947	0.89[EUR][1000 genomes]
rs2073265	0.90[EUR][1000 genomes]
rs2224066	0.89[EUR][1000 genomes]
rs2224067	0.89[EUR][1000 genomes]
rs2841308	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2841309	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4280969	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4374824	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6940893	0.90[EUR][1000 genomes]
rs8180616	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376820	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386064	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9399475	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496920	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030316	chr6:100733205-100759678	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9399482	MCHR2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100730400-100741600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:100731600-100744200	Weak transcription	NHDF-Ad	bronchial
3	chr6:100732000-100736000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:100732000-100736600	Weak transcription	HUVEC	blood vessel
5	chr6:100732000-100744200	Weak transcription	NHLF	lung
6	chr6:100732400-100736000	Weak transcription	A549	lung
7	chr6:100733000-100736000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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