Variant report

Variant	rs28427344
Chromosome Location	chr8:39924615-39924616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs13254619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481048	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1481049	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1481052	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888719	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888724	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888726	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888729	1.00[ASN][1000 genomes]
rs16888732	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888736	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888738	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2981193	1.00[ASN][1000 genomes]
rs34487659	0.95[ASN][1000 genomes]
rs34852909	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55742726	1.00[ASN][1000 genomes]
rs55784256	1.00[ASN][1000 genomes]
rs55977637	1.00[ASN][1000 genomes]
rs55999326	1.00[ASN][1000 genomes]
rs56302842	1.00[ASN][1000 genomes]
rs56347116	1.00[ASN][1000 genomes]
rs57503829	0.90[ASN][1000 genomes]
rs59027887	1.00[ASN][1000 genomes]
rs59248258	1.00[ASN][1000 genomes]
rs59885214	1.00[ASN][1000 genomes]
rs60772517	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61048623	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61513602	1.00[ASN][1000 genomes]
rs61682670	1.00[ASN][1000 genomes]
rs6474213	1.00[ASN][1000 genomes]
rs6474215	1.00[ASN][1000 genomes]
rs6474216	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6474217	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6983101	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6983118	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6987771	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6994138	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000302	1.00[ASN][1000 genomes]
rs7000470	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004182	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7007403	1.00[ASN][1000 genomes]
rs7014749	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7017503	1.00[ASN][1000 genomes]
rs7017791	1.00[ASN][1000 genomes]
rs71510122	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71510123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73617874	1.00[ASN][1000 genomes]
rs73674750	0.95[ASN][1000 genomes]
rs7822668	1.00[ASN][1000 genomes]
rs7822780	1.00[ASN][1000 genomes]
rs7832286	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7834273	0.93[AMR][1000 genomes]
rs7836554	1.00[ASN][1000 genomes]
rs7837003	1.00[ASN][1000 genomes]
rs7837122	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7837262	0.95[ASN][1000 genomes]
rs7837573	1.00[ASN][1000 genomes]
rs7838116	1.00[ASN][1000 genomes]
rs7838519	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839033	1.00[ASN][1000 genomes]
rs7841905	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv967581	chr8:39917856-39928866	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39913000-39939000	Weak transcription	Right Atrium	heart
2	chr8:39920000-39927400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:39923800-39924800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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