Variant report

Variant	rs57503829
Chromosome Location	chr8:39932093-39932094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs13254619	0.90[ASN][1000 genomes]
rs1481048	0.90[ASN][1000 genomes]
rs1481049	0.90[ASN][1000 genomes]
rs1481052	0.90[ASN][1000 genomes]
rs16888719	0.90[ASN][1000 genomes]
rs16888724	0.90[ASN][1000 genomes]
rs16888726	0.90[ASN][1000 genomes]
rs16888729	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16888732	0.90[ASN][1000 genomes]
rs16888736	0.90[ASN][1000 genomes]
rs16888738	0.90[ASN][1000 genomes]
rs28427344	0.90[ASN][1000 genomes]
rs2981193	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34487659	0.85[ASN][1000 genomes]
rs34852909	0.90[ASN][1000 genomes]
rs4521741	0.90[ASN][1000 genomes]
rs55742726	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55784256	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55977637	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55999326	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56302842	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56347116	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57071360	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs57282560	0.84[AMR][1000 genomes]
rs57560164	0.87[AMR][1000 genomes]
rs57814007	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs58424813	0.87[AMR][1000 genomes]
rs59027887	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59248258	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59404167	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59885214	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60751747	0.87[AMR][1000 genomes]
rs60772517	0.90[ASN][1000 genomes]
rs61048623	0.90[ASN][1000 genomes]
rs61513602	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61682670	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474213	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474215	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6474216	0.90[ASN][1000 genomes]
rs6474217	0.90[ASN][1000 genomes]
rs6983101	0.90[ASN][1000 genomes]
rs6983118	0.90[ASN][1000 genomes]
rs6987482	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6987771	0.90[ASN][1000 genomes]
rs6994138	0.90[ASN][1000 genomes]
rs7000302	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7000470	0.90[ASN][1000 genomes]
rs7004182	0.90[ASN][1000 genomes]
rs7007403	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7014749	0.90[ASN][1000 genomes]
rs7017503	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7017791	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71510122	0.90[ASN][1000 genomes]
rs71510123	0.90[ASN][1000 genomes]
rs73617874	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73619605	0.90[AMR][1000 genomes]
rs73674750	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7821033	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7821900	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7822668	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7822780	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7832286	0.90[ASN][1000 genomes]
rs7836554	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837003	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7837122	0.90[ASN][1000 genomes]
rs7837262	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7837573	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7838116	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7838519	0.90[ASN][1000 genomes]
rs7839033	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7841905	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39913000-39939000	Weak transcription	Right Atrium	heart
2	chr8:39929400-39932400	Weak transcription	Fetal Intestine Small	intestine
3	chr8:39930000-39937800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:39932000-39932800	Enhancers	A549	lung

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