Variant report

Variant	rs28450584
Chromosome Location	chr8:59225514-59225515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28588801	0.96[ASN][1000 genomes]
rs28620829	0.96[ASN][1000 genomes]
rs28783706	0.96[ASN][1000 genomes]
rs28848865	0.84[ASN][1000 genomes]
rs62512300	0.96[ASN][1000 genomes]
rs62514295	0.98[ASN][1000 genomes]
rs6988662	0.96[ASN][1000 genomes]
rs7843843	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59220200-59226000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59223000-59227400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:59223400-59226200	Weak transcription	HSMM	muscle
4	chr8:59224200-59228600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:59225000-59226000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:59225400-59227400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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