Variant report

Variant	rs28588801
Chromosome Location	chr8:59177338-59177339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11782762	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11984794	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11990667	0.80[AFR][1000 genomes]
rs11990692	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11990749	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11993378	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13439582	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16923230	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28450584	0.96[ASN][1000 genomes]
rs28620829	1.00[ASN][1000 genomes]
rs28783706	1.00[ASN][1000 genomes]
rs28848865	0.85[ASN][1000 genomes]
rs4077832	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4078275	0.84[AMR][1000 genomes]
rs4639499	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56282232	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56885504	0.80[AFR][1000 genomes]
rs62512271	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62512300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514295	0.99[ASN][1000 genomes]
rs6988662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003372	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7007613	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7843843	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297986	0.87[AFR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59170800-59187800	Weak transcription	Fetal Lung	lung
2	chr8:59173800-59177600	Weak transcription	GM12878-XiMat	blood
3	chr8:59173800-59183600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:59176800-59177600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59177000-59178800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:59177000-59178800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr8:59177000-59179000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:59177000-59179200	Enhancers	Primary T cells from cord blood	blood
9	chr8:59177000-59179400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr8:59177200-59177600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr8:59177200-59178200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:59177200-59178600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:59177200-59178600	Enhancers	Primary T helper cells fromperipheralblood	blood

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