Variant report

Variant	rs11993378
Chromosome Location	chr8:59171129-59171130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10098212	0.81[AMR][1000 genomes]
rs10435589	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11782762	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11984794	0.83[AFR][1000 genomes]
rs11990667	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11990692	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11990749	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13439582	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16923230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28588801	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4077832	0.84[AFR][1000 genomes]
rs4078275	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4639499	0.89[AFR][1000 genomes]
rs56282232	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56395012	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56885504	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62512271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62512300	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6988662	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7003372	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7007613	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843843	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9297986	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9297987	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59167400-59171800	Enhancers	Brain Germinal Matrix	brain
2	chr8:59167400-59172200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:59168600-59171600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:59169000-59172200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:59169400-59172000	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:59170200-59172000	Enhancers	Brain Angular Gyrus	brain
7	chr8:59170200-59172000	Enhancers	Brain Substantia Nigra	brain
8	chr8:59170200-59172200	Enhancers	Brain Hippocampus Middle	brain
9	chr8:59170600-59173000	Weak transcription	GM12878-XiMat	blood
10	chr8:59170800-59171200	Weak transcription	Brain Anterior Caudate	brain
11	chr8:59170800-59171600	Weak transcription	Left Ventricle	heart
12	chr8:59170800-59172400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:59170800-59172400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:59170800-59187800	Weak transcription	Fetal Lung	lung
15	chr8:59171000-59171400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:59171000-59171600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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