Variant report

Variant	rs9297987
Chromosome Location	chr8:59170546-59170547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10098212	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10435589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984794	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11990667	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11990749	0.87[ASW][hapmap];0.84[CHD][hapmap];0.83[MEX][hapmap];0.87[YRI][hapmap]
rs11993378	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16923230	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17198545	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077832	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4639499	0.93[ASW][hapmap];1.00[CEU][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56395012	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56885504	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62512266	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62512271	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7003372	0.87[ASW][hapmap];0.84[CHD][hapmap];0.83[MEX][hapmap];0.87[YRI][hapmap]
rs9297986	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9297987	CA8	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59167000-59170800	Enhancers	Fetal Lung	lung
2	chr8:59167400-59171000	Enhancers	Adipose Nuclei	Adipose
3	chr8:59167400-59171800	Enhancers	Brain Germinal Matrix	brain
4	chr8:59167400-59172200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:59167600-59170800	Enhancers	Fetal Stomach	stomach
6	chr8:59168600-59170800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:59168600-59171000	Enhancers	Fetal Heart	heart
8	chr8:59168600-59171600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:59169000-59170800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr8:59169000-59170800	Enhancers	HSMM	muscle
11	chr8:59169000-59171000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:59169000-59172200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr8:59169200-59170600	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr8:59169200-59170600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:59169200-59170600	Weak transcription	Fetal Brain Female	brain
16	chr8:59169400-59172000	Enhancers	Brain Cingulate Gyrus	brain
17	chr8:59169800-59170800	Enhancers	Colon Smooth Muscle	Colon
18	chr8:59170000-59170800	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:59170000-59170800	Enhancers	Brain Anterior Caudate	brain
20	chr8:59170000-59170800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr8:59170000-59170800	Enhancers	Fetal Muscle Leg	muscle
22	chr8:59170000-59170800	Enhancers	Left Ventricle	heart
23	chr8:59170000-59170800	Enhancers	Ovary	ovary
24	chr8:59170000-59170800	Enhancers	Psoas Muscle	Psoas
25	chr8:59170000-59170800	Enhancers	Right Atrium	heart
26	chr8:59170000-59170800	Enhancers	HSMMtube	muscle
27	chr8:59170200-59170600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:59170200-59170600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:59170200-59170600	Enhancers	GM12878-XiMat	blood
30	chr8:59170200-59172000	Enhancers	Brain Angular Gyrus	brain
31	chr8:59170200-59172000	Enhancers	Brain Substantia Nigra	brain
32	chr8:59170200-59172200	Enhancers	Brain Hippocampus Middle	brain
33	chr8:59170400-59170600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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