Variant report

Variant	rs17198545
Chromosome Location	chr8:59150985-59150986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10098212	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10435589	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11984794	0.86[AMR][1000 genomes]
rs11990667	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077832	0.87[AMR][1000 genomes]
rs4448263	0.84[CEU][hapmap]
rs4639499	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56395012	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56885504	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62512266	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7007613	0.80[AMR][1000 genomes]
rs9297986	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297987	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9643503	0.85[JPT][hapmap]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59146800-59151400	Enhancers	Fetal Brain Male	brain
2	chr8:59147400-59161000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:59150200-59151200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:59150200-59151400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:59150600-59151000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr8:59150800-59155000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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