Variant report

Variant	rs11990667
Chromosome Location	chr8:59163170-59163171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58906430..58909297-chr8:59162036..59164523,3	MCF-7	breast:
2	chr8:59140490..59142324-chr8:59162430..59165375,2	K562	blood:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10098212	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10435589	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11782762	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11984794	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11990692	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11990749	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11993378	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs13439582	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16923230	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17198545	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28588801	0.80[AFR][1000 genomes]
rs4077832	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4078275	0.83[AFR][1000 genomes]
rs4639499	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56282232	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs56395012	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56885504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62512266	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62512271	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6988662	0.81[AFR][1000 genomes]
rs7003372	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7007613	0.82[AMR][1000 genomes]
rs9297986	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9297987	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59162200-59170000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59162800-59166800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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