Variant report

Variant	rs6988662
Chromosome Location	chr8:59179101-59179102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11782762	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11984794	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11990667	0.81[AFR][1000 genomes]
rs11990692	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11990749	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11993378	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13439582	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16923230	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17200731	0.81[JPT][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap];0.80[TSI][hapmap]
rs28450584	0.96[ASN][1000 genomes]
rs28588801	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28620829	1.00[ASN][1000 genomes]
rs28783706	1.00[ASN][1000 genomes]
rs28848865	0.85[ASN][1000 genomes]
rs4077832	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4078275	0.84[AMR][1000 genomes]
rs4639499	0.92[ASW][hapmap];0.81[CHD][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56282232	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs56885504	0.81[AFR][1000 genomes]
rs62512271	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62512300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62514295	0.99[ASN][1000 genomes]
rs7003372	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7007613	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7843843	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297986	0.89[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59170800-59187800	Weak transcription	Fetal Lung	lung
2	chr8:59173800-59183600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:59177000-59179200	Enhancers	Primary T cells from cord blood	blood
4	chr8:59177000-59179400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr8:59179000-59179200	Enhancers	Fetal Stomach	stomach

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