Variant report

Variant	rs9297986
Chromosome Location	chr8:59170353-59170354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP7A1-1	chr8:59170346-59170404	XLOC_007090
2	lnc-CYP7A1-1	chr8:59170346-59170404	ENSG00000253281

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10098212	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10435589	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11782762	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11984794	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11990667	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11990692	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11990749	0.83[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11993378	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13439582	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs16923230	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17198545	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28588801	0.87[AFR][1000 genomes]
rs4077832	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4639499	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56282232	0.83[AFR][1000 genomes]
rs56395012	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56885504	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62512266	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62512271	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62512300	0.83[AFR][1000 genomes]
rs6988662	0.89[AFR][1000 genomes]
rs7003372	0.83[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9297987	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9643503	0.88[JPT][hapmap]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59166600-59170400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:59167000-59170800	Enhancers	Fetal Lung	lung
3	chr8:59167400-59171000	Enhancers	Adipose Nuclei	Adipose
4	chr8:59167400-59171800	Enhancers	Brain Germinal Matrix	brain
5	chr8:59167400-59172200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:59167600-59170800	Enhancers	Fetal Stomach	stomach
7	chr8:59168600-59170800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:59168600-59171000	Enhancers	Fetal Heart	heart
9	chr8:59168600-59171600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:59169000-59170400	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:59169000-59170800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr8:59169000-59170800	Enhancers	HSMM	muscle
13	chr8:59169000-59171000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:59169000-59172200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr8:59169200-59170600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr8:59169200-59170600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr8:59169200-59170600	Weak transcription	Fetal Brain Female	brain
18	chr8:59169400-59172000	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:59169800-59170400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:59169800-59170800	Enhancers	Colon Smooth Muscle	Colon
21	chr8:59170000-59170400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:59170000-59170400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr8:59170000-59170800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr8:59170000-59170800	Enhancers	Brain Anterior Caudate	brain
25	chr8:59170000-59170800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr8:59170000-59170800	Enhancers	Fetal Muscle Leg	muscle
27	chr8:59170000-59170800	Enhancers	Left Ventricle	heart
28	chr8:59170000-59170800	Enhancers	Ovary	ovary
29	chr8:59170000-59170800	Enhancers	Psoas Muscle	Psoas
30	chr8:59170000-59170800	Enhancers	Right Atrium	heart
31	chr8:59170000-59170800	Enhancers	HSMMtube	muscle
32	chr8:59170200-59170600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:59170200-59170600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:59170200-59170600	Enhancers	GM12878-XiMat	blood
35	chr8:59170200-59172000	Enhancers	Brain Angular Gyrus	brain
36	chr8:59170200-59172000	Enhancers	Brain Substantia Nigra	brain
37	chr8:59170200-59172200	Enhancers	Brain Hippocampus Middle	brain

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