Variant report

Variant	rs10435589
Chromosome Location	chr8:59171270-59171271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10098212	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11984794	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11990667	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11990749	0.91[YRI][hapmap]
rs11993378	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16923230	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17198545	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4077832	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4639499	1.00[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56395012	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56885504	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62512266	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62512271	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7003372	0.91[YRI][hapmap]
rs9297986	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9297987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643503	0.84[JPT][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59167400-59171800	Enhancers	Brain Germinal Matrix	brain
2	chr8:59167400-59172200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:59168600-59171600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:59169000-59172200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr8:59169400-59172000	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:59170200-59172000	Enhancers	Brain Angular Gyrus	brain
7	chr8:59170200-59172000	Enhancers	Brain Substantia Nigra	brain
8	chr8:59170200-59172200	Enhancers	Brain Hippocampus Middle	brain
9	chr8:59170600-59173000	Weak transcription	GM12878-XiMat	blood
10	chr8:59170800-59171600	Weak transcription	Left Ventricle	heart
11	chr8:59170800-59172400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:59170800-59172400	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:59170800-59187800	Weak transcription	Fetal Lung	lung
14	chr8:59171000-59171400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:59171000-59171600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:59171200-59172000	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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