Variant report

Variant	rs28454807
Chromosome Location	chr12:49156562-49156563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49154338..49156959-chr12:49181965..49183811,2	MCF-7	breast:
2	chr12:49147074..49149504-chr12:49154307..49156810,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174233	Chromatin interaction
ENSG00000257660	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11168732	0.86[ASN][1000 genomes]
rs11168733	0.92[EUR][1000 genomes]
rs12306165	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12307769	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28889716	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34863395	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35765758	0.86[ASN][1000 genomes]
rs3729969	0.86[ASN][1000 genomes]
rs3729980	0.86[ASN][1000 genomes]
rs3730072	0.92[AFR][1000 genomes]
rs3730074	0.92[AFR][1000 genomes]
rs7132180	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300155	0.86[ASN][1000 genomes]
rs7961282	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804777	0.92[AFR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49134600-49161800	Weak transcription	A549	lung
2	chr12:49144800-49158400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:49144800-49159400	Weak transcription	HSMMtube	muscle
4	chr12:49145400-49158400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr12:49145400-49158600	Weak transcription	Gastric	stomach
6	chr12:49147800-49158400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr12:49150600-49160200	Weak transcription	Right Atrium	heart
8	chr12:49152200-49159400	Weak transcription	Lung	lung
9	chr12:49152400-49158600	Weak transcription	Fetal Intestine Large	intestine
10	chr12:49152600-49158400	Weak transcription	Fetal Intestine Small	intestine
11	chr12:49152600-49158600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:49152800-49161600	Weak transcription	Aorta	Aorta
13	chr12:49153000-49158200	Weak transcription	Stomach Mucosa	stomach
14	chr12:49153000-49160200	Weak transcription	Fetal Lung	lung
15	chr12:49153200-49158200	Weak transcription	Right Ventricle	heart
16	chr12:49153200-49158600	Weak transcription	Fetal Heart	heart
17	chr12:49153600-49156800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:49153600-49158800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:49154000-49158400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:49154600-49158400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr12:49155000-49159400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr12:49155400-49158400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:49155400-49158400	Weak transcription	Left Ventricle	heart
24	chr12:49155400-49158400	Weak transcription	Osteobl	bone
25	chr12:49155600-49158400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr12:49155600-49158400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:49155800-49159200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:49156000-49158400	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:49156000-49158600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:49156200-49158200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:49156200-49158400	Weak transcription	Fetal Stomach	stomach
32	chr12:49156400-49158200	Weak transcription	Adipose Nuclei	Adipose
33	chr12:49156400-49158800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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