Variant report

Variant	rs7961282
Chromosome Location	chr12:49161396-49161397
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:49160089..49161948-chr12:49163739..49166516,3	MCF-7	breast:
2	chr12:49158319..49160113-chr12:49160844..49163235,2	MCF-7	breast:
3	chr12:49161108..49164614-chr12:49206175..49209169,3	MCF-7	breast:
4	chr12:49160841..49162680-chr12:49178634..49181167,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167535	Chromatin interaction
ENSG00000264201	Chromatin interaction
ENSG00000257653	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11168732	0.86[ASN][1000 genomes]
rs11168733	0.97[EUR][1000 genomes]
rs12306165	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12307769	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28433152	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454807	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28889716	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34863395	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35765758	0.86[ASN][1000 genomes]
rs3729969	0.86[ASN][1000 genomes]
rs3729980	0.86[ASN][1000 genomes]
rs3730072	0.97[AFR][1000 genomes]
rs3730074	0.97[AFR][1000 genomes]
rs7132180	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300155	0.86[ASN][1000 genomes]
rs9804777	0.97[AFR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49134600-49161800	Weak transcription	A549	lung
2	chr12:49152800-49161600	Weak transcription	Aorta	Aorta
3	chr12:49156800-49164400	Weak transcription	Fetal Kidney	kidney
4	chr12:49157000-49161800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:49157000-49164400	Weak transcription	HUVEC	blood vessel
6	chr12:49157600-49161600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr12:49157800-49161800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr12:49158200-49162000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:49158400-49161400	Enhancers	Ovary	ovary
10	chr12:49158400-49161400	Genic enhancers	NHLF	lung
11	chr12:49158400-49162200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr12:49158400-49162200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr12:49158400-49162400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:49158400-49163400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr12:49158400-49172400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:49158400-49173200	Strong transcription	Fetal Muscle Leg	muscle
17	chr12:49158400-49173200	Strong transcription	Fetal Stomach	stomach
18	chr12:49158400-49173400	Strong transcription	Fetal Intestine Small	intestine
19	chr12:49158400-49173600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:49158400-49177800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr12:49158600-49161400	Enhancers	NHDF-Ad	bronchial
22	chr12:49158600-49161600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr12:49158600-49163000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:49158600-49163000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr12:49158600-49164600	Weak transcription	NHEK	skin
26	chr12:49158600-49172400	Strong transcription	Fetal Intestine Large	intestine
27	chr12:49158800-49161600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr12:49158800-49161600	Weak transcription	Esophagus	oesophagus
29	chr12:49158800-49161800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:49158800-49162600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr12:49158800-49163400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr12:49158800-49170000	Strong transcription	Brain Cingulate Gyrus	brain
33	chr12:49159000-49161400	Genic enhancers	Osteobl	bone
34	chr12:49159000-49161600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr12:49159000-49162800	Strong transcription	Pancreas	Pancrea
36	chr12:49159000-49165200	Weak transcription	Stomach Mucosa	stomach
37	chr12:49159000-49171000	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr12:49159000-49172000	Strong transcription	Liver	Liver
39	chr12:49159200-49163000	Strong transcription	Colonic Mucosa	Colon
40	chr12:49159200-49172000	Strong transcription	Fetal Brain Female	brain
41	chr12:49159400-49161400	Strong transcription	Lung	lung
42	chr12:49159400-49161800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:49159400-49163000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr12:49159400-49171600	Strong transcription	Stomach Smooth Muscle	stomach
45	chr12:49159400-49172000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr12:49159400-49181000	Weak transcription	Small Intestine	intestine
47	chr12:49159600-49161400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr12:49159600-49161400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:49159600-49161800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr12:49159600-49162200	Genic enhancers	Skeletal Muscle Male	skeletal muscle

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