Variant report

Variant	rs7300155
Chromosome Location	chr12:49162598-49162599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:49158319..49160113-chr12:49160844..49163235,2	MCF-7	breast:
2	chr12:49158907..49161249-chr12:49162587..49164514,2	MCF-7	breast:
3	chr12:49161108..49164614-chr12:49206175..49209169,3	MCF-7	breast:
4	chr12:49160841..49162680-chr12:49178634..49181167,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257653	Chromatin interaction
ENSG00000167535	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11168732	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168733	1.00[CHB][hapmap]
rs11168740	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs11168742	1.00[CHB][hapmap]
rs12306165	1.00[CHB][hapmap]
rs12307769	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs28433152	0.86[ASN][1000 genomes]
rs28454807	0.86[ASN][1000 genomes]
rs34863395	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35765758	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3729969	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3729980	0.93[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730069	1.00[CHB][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes]
rs3730070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3730072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs3730074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7132180	1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7961282	0.86[ASN][1000 genomes]
rs7975385	0.93[CEU][hapmap]
rs9668292	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs9804777	0.93[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49156800-49164400	Weak transcription	Fetal Kidney	kidney
2	chr12:49157000-49164400	Weak transcription	HUVEC	blood vessel
3	chr12:49158400-49163400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:49158400-49172400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:49158400-49173200	Strong transcription	Fetal Muscle Leg	muscle
6	chr12:49158400-49173200	Strong transcription	Fetal Stomach	stomach
7	chr12:49158400-49173400	Strong transcription	Fetal Intestine Small	intestine
8	chr12:49158400-49173600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:49158400-49177800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr12:49158600-49163000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr12:49158600-49163000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:49158600-49164600	Weak transcription	NHEK	skin
13	chr12:49158600-49172400	Strong transcription	Fetal Intestine Large	intestine
14	chr12:49158800-49162600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:49158800-49163400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:49158800-49170000	Strong transcription	Brain Cingulate Gyrus	brain
17	chr12:49159000-49162800	Strong transcription	Pancreas	Pancrea
18	chr12:49159000-49165200	Weak transcription	Stomach Mucosa	stomach
19	chr12:49159000-49171000	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr12:49159000-49172000	Strong transcription	Liver	Liver
21	chr12:49159200-49163000	Strong transcription	Colonic Mucosa	Colon
22	chr12:49159200-49172000	Strong transcription	Fetal Brain Female	brain
23	chr12:49159400-49163000	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr12:49159400-49171600	Strong transcription	Stomach Smooth Muscle	stomach
25	chr12:49159400-49172000	Strong transcription	Rectal Mucosa Donor 31	rectum
26	chr12:49159400-49181000	Weak transcription	Small Intestine	intestine
27	chr12:49159600-49163600	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr12:49159600-49172600	Strong transcription	Brain Germinal Matrix	brain
29	chr12:49159600-49174000	Strong transcription	Duodenum Mucosa	Duodenum
30	chr12:49159800-49162800	Genic enhancers	Adipose Nuclei	Adipose
31	chr12:49160000-49162600	Genic enhancers	Right Ventricle	heart
32	chr12:49160000-49163000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr12:49160000-49163000	Genic enhancers	Left Ventricle	heart
34	chr12:49160200-49162800	Genic enhancers	Fetal Heart	heart
35	chr12:49160200-49164000	Weak transcription	NH-A	brain
36	chr12:49160400-49162600	Strong transcription	Brain Substantia Nigra	brain
37	chr12:49160400-49163000	Strong transcription	Colon Smooth Muscle	Colon
38	chr12:49160400-49164000	Weak transcription	HMEC	breast
39	chr12:49160600-49162800	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:49160600-49164200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr12:49160600-49169000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr12:49160600-49177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:49160600-49180600	Weak transcription	Fetal Brain Male	brain
44	chr12:49160800-49162800	Strong transcription	Gastric	stomach
45	chr12:49160800-49163400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:49160800-49164400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr12:49160800-49172000	Strong transcription	Placenta	Placenta
48	chr12:49161000-49162600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr12:49161000-49163000	Strong transcription	Hela-S3	cervix
50	chr12:49161000-49172600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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