Variant report

Variant	rs28460849
Chromosome Location	chr8:35464843-35464844
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10101644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102232	1.00[AFR][1000 genomes]
rs10111660	1.00[AMR][1000 genomes]
rs10113672	1.00[AMR][1000 genomes]
rs10283043	1.00[AFR][1000 genomes]
rs13328368	1.00[AMR][1000 genomes]
rs1439153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884197	1.00[AFR][1000 genomes]
rs16884214	1.00[AFR][1000 genomes]
rs16884219	1.00[AFR][1000 genomes]
rs16884220	1.00[AFR][1000 genomes]
rs28591276	1.00[AMR][1000 genomes]
rs28593494	1.00[AMR][1000 genomes]
rs28641967	1.00[AMR][1000 genomes]
rs28674529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28694460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28699244	1.00[AMR][1000 genomes]
rs28706915	1.00[AMR][1000 genomes]
rs28894781	1.00[AMR][1000 genomes]
rs7357437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35463200-35465000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr8:35463400-35465000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr8:35463600-35465600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr8:35464200-35474600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:35464200-35482400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:35464600-35465600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:35464600-35467200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:35464600-35469400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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