Variant report

Variant	rs28694460
Chromosome Location	chr8:35455596-35455597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10101644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102232	1.00[AFR][1000 genomes]
rs10111660	1.00[AMR][1000 genomes]
rs10113672	1.00[AMR][1000 genomes]
rs10283043	1.00[AFR][1000 genomes]
rs13328368	1.00[AMR][1000 genomes]
rs1439153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16884197	1.00[AFR][1000 genomes]
rs16884214	1.00[AFR][1000 genomes]
rs16884219	1.00[AFR][1000 genomes]
rs16884220	1.00[AFR][1000 genomes]
rs28460849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591276	1.00[AMR][1000 genomes]
rs28593494	1.00[AMR][1000 genomes]
rs28641967	1.00[AMR][1000 genomes]
rs28674529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28699244	1.00[AMR][1000 genomes]
rs28706915	1.00[AMR][1000 genomes]
rs28894781	1.00[AMR][1000 genomes]
rs7357437	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35441600-35463600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:35451800-35458000	Weak transcription	Fetal Kidney	kidney
3	chr8:35453200-35456200	Strong transcription	Fetal Brain Female	brain
4	chr8:35453400-35457000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:35453600-35455600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:35453600-35455800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:35453600-35457800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:35453600-35464200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:35454000-35455600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:35454800-35456200	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr8:35454800-35456400	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr8:35454800-35456600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:35455000-35456600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:35455200-35455600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:35455200-35456400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:35455400-35456200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:35455400-35456200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:35455400-35457000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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