Variant report

Variant	rs28464948
Chromosome Location	chr3:24442615-24442616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11129151	0.82[AMR][1000 genomes]
rs11920973	0.82[AMR][1000 genomes]
rs13323817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13324127	0.81[EUR][1000 genomes]
rs4241524	1.00[EUR][1000 genomes]
rs4276129	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4444656	1.00[EUR][1000 genomes]
rs4484144	0.82[AMR][1000 genomes]
rs4858611	1.00[EUR][1000 genomes]
rs61209297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796381	1.00[EUR][1000 genomes]
rs9816421	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828770	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882821	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:24431800-24442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24432600-24448400	Weak transcription	Gastric	stomach
5	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
6	chr3:24432800-24443200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:24435200-24443200	Weak transcription	Psoas Muscle	Psoas
8	chr3:24436000-24443200	Weak transcription	Pancreas	Pancrea
9	chr3:24438600-24443000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:24439000-24443000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:24440800-24443600	Enhancers	Stomach Mucosa	stomach
12	chr3:24440800-24444400	Enhancers	Fetal Intestine Large	intestine
13	chr3:24440800-24444400	Enhancers	Fetal Intestine Small	intestine
14	chr3:24441000-24442800	Enhancers	Ovary	ovary
15	chr3:24441000-24443200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:24441000-24443800	Enhancers	Colon Smooth Muscle	Colon
17	chr3:24441000-24443800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr3:24441200-24442800	Enhancers	Aorta	Aorta
19	chr3:24441200-24443200	Weak transcription	Left Ventricle	heart
20	chr3:24441200-24443600	Enhancers	Fetal Lung	lung
21	chr3:24441400-24443800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr3:24441400-24443800	Enhancers	Brain Germinal Matrix	brain
23	chr3:24441600-24443600	Enhancers	Liver	Liver
24	chr3:24441600-24443800	Enhancers	Fetal Kidney	kidney
25	chr3:24441800-24442800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:24442000-24442800	Enhancers	Stomach Smooth Muscle	stomach
27	chr3:24442000-24443000	Enhancers	Duodenum Mucosa	Duodenum
28	chr3:24442000-24443600	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:24442000-24443600	Enhancers	Hela-S3	cervix
30	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:24442200-24443000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr3:24442400-24442800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:24442400-24443200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:24442400-24443600	Enhancers	NHDF-Ad	bronchial
35	chr3:24442600-24443400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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