Variant report

Variant	rs4444656
Chromosome Location	chr3:24429109-24429110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24395912..24398786-chr3:24427105..24429295,2	K562	blood:
2	chr3:24428751..24431920-chr3:24433157..24435631,4	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11129151	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[ASN][1000 genomes]
rs11707001	1.00[CHB][hapmap]
rs11920973	0.98[ASN][1000 genomes]
rs13066150	1.00[CHB][hapmap]
rs13323817	1.00[EUR][1000 genomes]
rs13324127	0.81[EUR][1000 genomes]
rs28464948	1.00[EUR][1000 genomes]
rs4241524	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4241525	0.85[ASN][1000 genomes]
rs4273319	0.85[ASN][1000 genomes]
rs4276129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358250	0.85[ASN][1000 genomes]
rs4484144	0.98[ASN][1000 genomes]
rs4524225	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs4557108	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4630885	0.85[ASN][1000 genomes]
rs4858611	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858615	1.00[CHB][hapmap]
rs61209297	1.00[EUR][1000 genomes]
rs6796381	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624363	1.00[CHB][hapmap]
rs9816421	1.00[EUR][1000 genomes]
rs9826626	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9828770	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882821	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24394000-24431400	Weak transcription	Gastric	stomach
2	chr3:24418000-24429200	Weak transcription	Right Ventricle	heart
3	chr3:24418000-24429800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:24418000-24430000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:24418200-24429200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:24418200-24429800	Weak transcription	Fetal Lung	lung
7	chr3:24419000-24429200	Weak transcription	Left Ventricle	heart
8	chr3:24420200-24441600	Weak transcription	Liver	Liver
9	chr3:24421200-24429800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:24422000-24430000	Weak transcription	K562	blood
11	chr3:24427000-24432400	Weak transcription	Lung	lung
12	chr3:24427000-24433000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:24427200-24429200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:24427600-24431000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:24427800-24429200	Enhancers	Fetal Intestine Small	intestine
16	chr3:24427800-24432000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:24428000-24429400	Enhancers	HSMM	muscle
18	chr3:24428000-24431600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:24428000-24432200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:24428000-24432200	Enhancers	HMEC	breast
21	chr3:24428200-24431800	Enhancers	NHEK	skin
22	chr3:24428400-24429600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:24428400-24430000	Enhancers	NHDF-Ad	bronchial
24	chr3:24428400-24430200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:24428600-24429200	Enhancers	NHLF	lung
26	chr3:24428600-24429600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:24428600-24430400	Enhancers	Rectal Smooth Muscle	rectum
28	chr3:24428600-24431600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:24428600-24431800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr3:24428600-24432000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:24428600-24432800	Enhancers	Colon Smooth Muscle	Colon
32	chr3:24428800-24429800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:24428800-24429800	Enhancers	Fetal Muscle Leg	muscle
34	chr3:24428800-24432400	Weak transcription	Brain Angular Gyrus	brain
35	chr3:24428800-24432800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:24429000-24429200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr3:24429000-24429600	Enhancers	Aorta	Aorta
38	chr3:24429000-24429800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
39	chr3:24429000-24430800	Enhancers	Psoas Muscle	Psoas
40	chr3:24429000-24431800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:24429000-24432600	Enhancers	HSMMtube	muscle
42	chr3:24429000-24432800	Enhancers	Adipose Nuclei	Adipose
43	chr3:24429000-24432800	Enhancers	Pancreas	Pancrea

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