Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24468904..24470956-chr3:24474502..24476814,2	MCF-7	breast:
2	chr3:24473151..24475358-chr3:24479706..24482212,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11129151	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11711197	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs11920973	0.84[ASN][1000 genomes]
rs13323817	1.00[CEU][hapmap]
rs17014703	1.00[CEU][hapmap]
rs17014715	1.00[CEU][hapmap]
rs17014722	1.00[CEU][hapmap]
rs4241524	0.84[ASN][1000 genomes]
rs4241525	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276129	0.85[ASN][1000 genomes]
rs4358250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4444656	0.85[ASN][1000 genomes]
rs4484144	0.84[ASN][1000 genomes]
rs4524225	0.88[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4557108	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs4630885	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858611	0.85[ASN][1000 genomes]
rs6796381	0.85[ASN][1000 genomes]
rs6799131	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816421	1.00[CEU][hapmap]
rs9826626	1.00[CEU][hapmap]
rs9828770	0.84[ASN][1000 genomes]
rs9882821	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
5	chr3:24464800-24475400	Weak transcription	Aorta	Aorta
6	chr3:24466200-24474600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:24470000-24474600	Weak transcription	HepG2	liver
8	chr3:24470000-24475400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr3:24470200-24475800	Weak transcription	Psoas Muscle	Psoas
10	chr3:24470200-24479000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:24472600-24478800	Weak transcription	Fetal Lung	lung

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