Variant report

Variant	rs4524225
Chromosome Location	chr3:24472115-24472116
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11129151	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11711197	0.86[JPT][hapmap]
rs11920973	0.81[ASN][1000 genomes]
rs4241524	0.84[ASN][1000 genomes]
rs4241525	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4273319	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4276129	0.82[ASN][1000 genomes]
rs4358250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4444656	0.82[ASN][1000 genomes]
rs4484144	0.81[ASN][1000 genomes]
rs4557108	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs4630885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4858611	0.82[ASN][1000 genomes]
rs6796381	0.82[ASN][1000 genomes]
rs6799131	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9828770	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24460800-24476600	Weak transcription	Left Ventricle	heart
5	chr3:24464800-24475400	Weak transcription	Aorta	Aorta
6	chr3:24466200-24474600	Weak transcription	Fetal Intestine Small	intestine
7	chr3:24470000-24474000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:24470000-24474600	Weak transcription	HepG2	liver
9	chr3:24470000-24475400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:24470200-24475800	Weak transcription	Psoas Muscle	Psoas
11	chr3:24470200-24479000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:24471800-24472200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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