Variant report

Variant	rs4858611
Chromosome Location	chr3:24433103-24433104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24432170..24434424-chr3:24439697..24442133,2	K562	blood:
2	chr3:24431310..24433728-chr3:24534958..24537057,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11129151	0.98[ASN][1000 genomes]
rs11920973	0.98[ASN][1000 genomes]
rs13323817	1.00[EUR][1000 genomes]
rs13324127	0.81[EUR][1000 genomes]
rs28464948	1.00[EUR][1000 genomes]
rs4241524	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4241525	0.85[ASN][1000 genomes]
rs4273319	0.85[ASN][1000 genomes]
rs4276129	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358250	0.85[ASN][1000 genomes]
rs4444656	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484144	0.98[ASN][1000 genomes]
rs4524225	0.82[ASN][1000 genomes]
rs4557108	0.82[ASN][1000 genomes]
rs4630885	0.85[ASN][1000 genomes]
rs61209297	1.00[EUR][1000 genomes]
rs6796381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9816421	1.00[EUR][1000 genomes]
rs9826626	1.00[EUR][1000 genomes]
rs9828770	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9882821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24420200-24441600	Weak transcription	Liver	Liver
2	chr3:24429600-24433400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr3:24430400-24437200	Weak transcription	K562	blood
4	chr3:24430600-24443600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:24430800-24434800	Weak transcription	Psoas Muscle	Psoas
6	chr3:24431600-24434400	Weak transcription	HepG2	liver
7	chr3:24431600-24435800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:24431600-24437800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:24431600-24437800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:24431600-24438200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:24431800-24434600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:24431800-24434600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:24431800-24442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:24432000-24434600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:24432200-24440800	Weak transcription	Stomach Mucosa	stomach
16	chr3:24432200-24445200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:24432600-24433200	Weak transcription	Aorta	Aorta
18	chr3:24432600-24434800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:24432600-24442000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:24432600-24448400	Weak transcription	Gastric	stomach
21	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
22	chr3:24432800-24434000	Weak transcription	Fetal Kidney	kidney
23	chr3:24432800-24434600	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:24432800-24434600	Weak transcription	Fetal Lung	lung
25	chr3:24432800-24434600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:24432800-24434800	Weak transcription	Pancreas	Pancrea
27	chr3:24432800-24434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:24432800-24434800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:24432800-24435000	Weak transcription	Left Ventricle	heart
30	chr3:24432800-24440800	Weak transcription	Fetal Intestine Large	intestine
31	chr3:24432800-24440800	Weak transcription	Fetal Intestine Small	intestine
32	chr3:24432800-24443200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr3:24433000-24434600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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