Variant report

Variant	rs9816421
Chromosome Location	chr3:24448007-24448008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11711197	1.00[CEU][hapmap]
rs11919155	1.00[JPT][hapmap]
rs13323817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13324127	0.81[EUR][1000 genomes]
rs17014703	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17014715	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17014722	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs28464948	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241524	1.00[EUR][1000 genomes]
rs4276129	1.00[EUR][1000 genomes]
rs4444656	1.00[EUR][1000 genomes]
rs4858611	1.00[EUR][1000 genomes]
rs61209297	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796381	1.00[EUR][1000 genomes]
rs9826626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828770	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3363542	chr3:24447880-24448153	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24432600-24448400	Weak transcription	Gastric	stomach
2	chr3:24432600-24448600	Weak transcription	Right Ventricle	heart
3	chr3:24442000-24469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:24443400-24448400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:24443600-24457600	Weak transcription	Fetal Lung	lung
6	chr3:24443800-24448400	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:24443800-24449800	Weak transcription	Esophagus	oesophagus
8	chr3:24443800-24456400	Weak transcription	Aorta	Aorta
9	chr3:24443800-24456600	Weak transcription	Pancreas	Pancrea
10	chr3:24443800-24457800	Weak transcription	Psoas Muscle	Psoas
11	chr3:24443800-24475800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:24444400-24459000	Weak transcription	Fetal Intestine Large	intestine
13	chr3:24446000-24452400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr3:24446000-24476800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:24446200-24450000	Enhancers	Liver	Liver
16	chr3:24448000-24448200	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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