Variant report
| Variant | rs28469865 |
|---|---|
| Chromosome Location | chr21:16205670-16205671 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ATF1 | chr21:16205656-16205889 | K562 | blood: | n/a | n/a |
| 2 | POLR2A | chr21:16205521-16205684 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RBMX2P1 | TF binding region |
| ENSG00000226406 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs12329770 | 1.00[AMR][1000 genomes] |
| rs12329786 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13433397 | 1.00[AMR][1000 genomes] |
| rs28434583 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28592246 | 1.00[AMR][1000 genomes] |
| rs28684491 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9977802 | 1.00[AMR][1000 genomes] |
| rs9977824 | 1.00[AMR][1000 genomes] |
| rs9981575 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869911 | chr21:16184645-16210579 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
